Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5 223 3e-53 seq3 172 4e-38 >seq5 Length=304825324 Score = 223 bits (246), Expect = 3e-53 Identities = 453/670 (68%), Gaps = 2/670 (0%) Strand=Plus/Minus Query 19984 ACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAA 20043 ||||| || || || | ||||| || || |||||| | || ||| || || |||| Sbjct 43288836 ACCGGCACCGGCACCCTGTCTGTGTTCGGCATGCAAAACCTCTACAACCTGCGAGGTGAA 43288777 Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| || | || || || || || || ||| | || || | || || | | ||| Sbjct 43288776 TTTCCTTTGCTGACAACTAAGCGTGTGTTCTGGTAGGGTGTCCTGGAGGAACTGCTGTGG 43288717 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||||| || | |||||| || ||||| | || || | | ||| ||| Sbjct 43288716 TTTATTAGGGGTTGCACAAATGGTAAGGAGCTCTCCGCCAAGGGGATGACGATCTGGGAT 43288657 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223 || |||| || || |||| ||| ||| || || | | |||| || | | Sbjct 43288656 GCCAATGGGTCACGTGAACTTTTGGACAATC-TGGGCTTCACT-CAGAGAAGAAGGAGGT 43288599 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 ||||| || |||| || || || |||||||||||||| || ||||| || |||||| Sbjct 43288598 TTGGGACCAGTGTGTGCCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAAC 43288539 Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343 ||| |||||| ||| |||||||| | || ||||||| || || | ||| ||||| Sbjct 43288538 ACAGATTATTCTGGGCAAGGAGTGGGTCTGCTACAAAAAGTCATCGACAAAATCAAAACC 43288479 Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403 ||||| | |||||||| || ||| | || || |||| | |||||| | ||| | ||| Sbjct 43288478 AACCCTGATGACAGAAGGATCATTATGTGTGCTTGGAGTCCAAAAGATCTTCCTCTCATG 43288419 Query 20404 GCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGT 20463 || ||||||| || || || || || || ||||| || ||| ||| || || ||| Sbjct 43288418 GCCTTGCCTCTGTGCCACGCTCTCTGTCAGTTCTACGTAGCAAATGGTGAGTTTTCCTGT 43288359 Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523 || | || || ||||||| |||||||| || || || || |||| ||||| ||||| Sbjct 43288358 CAGCTATAGCAGCGATCCGGAGATATGGGCCTTGGGGTGCCGTTCACCATTGCCAGTTAC 43288299 Query 20524 GCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCAC 20583 | ||||| || || |||||||| || | |||| | || | ||||| || || ||| Sbjct 43288298 TCCCTGCTCACCTACATGATTGCTCACATCACAGGCCTGAAGCCAGGTGATTTTGTACAC 43288239 Query 20584 ACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACA 20643 | | ||||| || ||| | || |||||||| || || ||||| | ||| | Sbjct 43288238 TCTCTGGGAGATGCTCATGTATATGAGAATCATATTGAGCCACTAAAAATTCAGCTTCAG 43288179 Query 20644 CGACAACCAA 20653 ||| |||||| Sbjct 43288178 CGAGAACCAA 43288169 >seq3 Length=527952102 Score = 172 bits (190), Expect = 4e-38 Identities = 311/451 (69%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || |||||||| | | |||||| || || |||||||||||||| || ||||| Sbjct 37329405 AAGAAGGAGATTTGGGACAGG-GTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACA 37329347 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || ||||||||| |||||| ||| |||||||| ||||| |||||| || | | | Sbjct 37329346 GAGAGATGAACACAGATTATTCTGGGCAAGGAGTGGATCAGCTACAAA--GTCACTGACA 37329289 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 ||| ||||| ||||| | |||||||| || ||| | ||||| | ||| | |||||| Sbjct 37329288 AAATCAAAACCAACCCTGATGACAGAAGGATCATTATGTGCGCTTAGAATCCAAAAGATC 37329229 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | ||||| ||||||||||| || | || || | || ||||| | || | Sbjct 37329228 TTCCTCTCATGGCCTTGCCTCCATGCCAGCT-CTCTGTCCGTTCTACGTAGTGAACGGAG 37329170 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 | | || |||||| | || || | ||| | |||||||| | || || || |||| | Sbjct 37329169 AGCTTTCCTGTCAACTATACCAGCAATCTGGAGATATGGGCATCGGGGTGCCGTTCAGCA 37329110 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 |||| ||||| ||||| || || ||||| | || || | | || | |||| Sbjct 37329109 TTGCCAGTTACTTCCTGCTCACCTACATGATCACTCACACCACGGGCCTGAAGCCAGGTG 37329050 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632 |||| || | | | ||||| || ||| | || | |||||||| || | ||||| Sbjct 37329049 ACTTTGTACCTTCTCTGGGAGATGCTCATGTATATGTGAATCATATTGAGTCCCTAAAAA 37328990 Query 20633 TACAGTTAACACGACAACCAAAACAATTCCC 20663 | ||| | || || | | || || ||||| Sbjct 37328989 TTCAGCTTCCATGAGAGCAAAGACCTTTCCC 37328959 Score = 132 bits (146), Expect = 4e-26 Identities = 366/557 (66%), Gaps = 23/557 (4%) Strand=Plus/Minus Query 19990 ACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCC 20049 ||||| || | ||||| || || |||||| | | || ||| | || ||||||||| Sbjct 405699087 ACTGGCACCCTGTCTGTGTTGGGCATGCAAGCCTGCTACAACCTATGAGGTGAATTTCCT 405699028 Query 20050 TTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATT 20109 || | || || || | | || ||||| || | || || | | |||||||| Sbjct 405699027 TTGCTGACAACCAAGCATATGTTCTGGAAGGGTGCCCTTCG-GAACTGCTGGGGTTTATT 405698969 Query 20110 AAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACAT 20169 | || | |||||| || ||||| | ||||| || ||||| ||| || || Sbjct 405698968 AGGGGTTGCACAAATGGTAAGGAGCTCTCTGCCAAAGGGGTGAAGATCTGGGATGCCAAT 405698909 Query 20170 GGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGG 20228 || || | ||||||| | | | ||| || || || | |||| | ||||| | Sbjct 405698908 GGGTCACATTAATTTTTGGAAACC--TGGGCTTCACTCACAGAGAAGAAG---ATTTGAG 405698854 Query 20229 TCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAA 20288 || ||||||| || || |||||||||||||| || |||| || || |||||| | Sbjct 405698853 ACCAGTGTATGACTTCCAGTGGAGACATTTTGGGGCAGAATTCAAAGAGATTAACACAGA 405698794 Query 20289 TTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCC 20348 ||||| |||||||||||| ||||| | ||||| || ||| | ||| ||||| |||| Sbjct 405698793 TTATTCTGGACAAGGAGTGGATCAGCTTCAAAAAGTCATTGACAAAATCAAAACCAACCT 405698734 Query 20349 AAACGACAGAAGAATTATT------TTATGCGC--CTGGAACGCTAAAGATGTGCCTTTA 20400 | |||||||| || ||| ||||| || ||||| | ||||| | Sbjct 405698733 TGATGACAGAAGGATCATTTTGTCATTATGTGCATTTGGAATTCAAAAGA--------TC 405698682 Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||||||||| |||| ||| || || || || || || | ||| |||| | || Sbjct 405698681 ATGGCTTTGCCACCATACCATGCTCTCTGTCAGTTCTATGTAGTGAATGATGAGCTTTCC 405698622 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || || | || || |||| | |||||||| || || || | ||||| || | ||| Sbjct 405698621 TGGCAGCTATACCAGTGATCTGGAGATATGGGTCTTGGGGTGCTGTTCAACATCACCAGT 405698562 Query 20521 TATGCGCTGCTTACGTA 20537 || | ||||| || || Sbjct 405698561 TACTCCCTGCTCACCTA 405698545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399159596884120