Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6 389 4e-103 seq2 379 2e-100 seq1 129 6e-25 seq3 87.8 2e-12 >seq6 Length=292091736 Score = 389 bits (430), Expect = 4e-103 Identities = 608/859 (71%), Gaps = 23/859 (3%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||| || |||| |||||||||||||| ||||| || |||| | || | || Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 ||||||| || | | ||| || || | || || |||||||| ||||||| ||| Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || | |||||||| | | || ||||| || | |||||| ||| Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | | || || | | |||| | ||||| | | || ||||| || Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAAC 153786460 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 ||||| || |||||||||||||| | ||||||||||| ||||||| ||| |||||||| Sbjct 153786459 ATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAA 153786400 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 |||||||| ||||| || |||||||| || ||| ||||| | || || || || ||| Sbjct 153786399 GTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAA 153786340 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 ||||| ||||| |||||||| ||||| ||| | ||||| ||| | | ||||| |||| Sbjct 153786339 AAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTG 153786280 Query 14378 TTCGATATCCATTTTCTA-GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 | | ||||| || | ||||| |||| ||| ||||||| | || | ||||||||| Sbjct 153786279 TCCCCAATCCA---TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 153786223 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| || | | |||| | |||||| || ||| | ||||| |||||||| | Sbjct 153786222 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA----TATGTGTCAATAAGAAGA 153786167 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 |||||||||||||| ||| | ||| |||| || || || || ||||| || || | ||| Sbjct 153786166 CTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCT 153786107 Query 14555 TCTG--ACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 |||| ||| ||||| || || |||| ||| || |||||||||| ||||| ||| Sbjct 153786106 TCTGTTACC--TGTACTTCTTGGCTAAACCGCTTCAACC-AATTTTCATTTACTATGCCA 153786050 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||||| |||||||| || | || | || || ||||| | ||| ||| | | Sbjct 153786049 TCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAA 153785990 Query 14672 TTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14729 ||| ||| | ||| | ||||||||||||||| || || ||| ||||||| || | Sbjct 153785989 GTTTCCCAGT--GCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGG 153785932 Query 14730 CAACAGCTTTTTTATACAT 14748 | | ||||| |||||||| Sbjct 153785931 CCTCTGCTTTCTTATACAT 153785913 >seq2 Length=541556283 Score = 379 bits (420), Expect = 2e-100 Identities = 590/834 (71%), Gaps = 12/834 (1%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||| || ||||| ||||||||||||||||||||| || |||| | || | || Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 |||||||| || | | ||| || || | || ||||| ||||| ||||||| ||| Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || | ||||| | | | | || || || || | |||||| ||| Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACA 435770879 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | ||||| | | |||| | ||||| | || ||||| || Sbjct 435770878 GCACTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAAC 435770819 Query 14198 ATTAAACACGCAAAA-TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 ||||| || |||||| |||||||| | |||||||||| ||||||||||| |||||||| Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 |||||||| ||||| || |||||||| || | ||| ||||| | || || || || || Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 |||||| ||||| |||||||| ||||| |||| | |||| ||| | | ||||| ||| Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTT 435770639 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 || | |||||| | ||||| |||| ||| ||||||| | || | ||||||||| Sbjct 435770638 GTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 435770579 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| || | | |||| | ||||||| | ||| ||| || || |||||||| | Sbjct 435770578 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGA 435770521 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATC-TAGC 14553 ||||||||||||| |||||| | ||||| | || || || ||||| || || | || Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461 Query 14554 TTCTG--ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 ||||| ||| | ||| ||| | ||| | || ||||||||||||| | ||| ||| Sbjct 435770460 TTCTGTTACC--TATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCA 435770403 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||||| |||||||| || || || | | || ||||| | ||| ||| | | Sbjct 435770402 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAA 435770343 Query 14672 TTTTTCCAAT-CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 || ||| | | || | ||||||||||||||| || || ||| ||||||| || Sbjct 435770342 GCTTCCCAGTGCTGC-ATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAA 435770290 >seq1 Length=748055161 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| |||||||| |||||||| ||||| || |||||||| | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| |||||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 529237753 CTACGACACGTTCACC 529237768 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 529233556 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCT 529233615 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||| || ||||| ||||||||||||||||||||| Sbjct 529233616 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTT 529233651 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/123 (77%), Gaps = 9/123 (7%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||||| | ||| ||| || || |||||||| | |||||||||||||| || Sbjct 529239606 CCTT-TCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAATG 529239662 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTACC 14569 |||||||||||| || || || || ||||| || || | ||||||| ||| ||||| Sbjct 529239663 TATGTTTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACC--TGTACT 529239720 Query 14570 TCT 14572 ||| Sbjct 529239721 TCT 529239723 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 13853 AACTAAAAATCAACATCTAACGAAAAAACATTATCGTCT-TTGTT--AGAAATAACGCCC 13909 || |||||||| |||| || | || ||||| |||| ||||| || ||||| | Sbjct 368162193 AATTAAAAATCTGCATCCAAGGTGAAGACATT---GTCTGTTGTTTCAGCCATAACTGCA 368162249 Query 13910 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13969 | ||||||||| || ||||||||||| || || ||||| |||||||| || ||| Sbjct 368162250 AAGCGTTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATA 368162309 Query 13970 TTTTCCATAAAATCAAATGGATT 13992 |||||||| |||||||| ||||| Sbjct 368162310 TTTTCCATGAAATCAAAGGGATT 368162332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482315356930880