Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=541556283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 |||||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 520270484 CATCATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCC 520270543 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || |||| | | || | ||| |||| ||||| | ||||| ||| | || ||| Sbjct 520270544 CAGTGACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAAGAGGGCATCCCCCCTGA 520270603 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| | | || | ||| ||||| || ||||||||| | || || || || Sbjct 520270604 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 520270663 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCAT 25035 || ||| |||||||| |||| || ||| Sbjct 520270664 CAACATCCAGAAAGAATCCACCCTCCAT 520270691 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| || ||||| || ||||| || || ||| | || || ||| | || Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| ||| || | ||||||||| | || |||||| Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | | || | ||| || || || ||||||||| || || || |||| | Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| || || || || | || ||| | |||||| Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 204601967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418278428030720