Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq2 87.8 2e-12
>seq2
Length=541556283
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887
|||||||||||| ||||| || ||| | || ||||| || || ||| | || || || |
Sbjct 520270484 CATCATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCC 520270543
Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
|| |||| | | || | ||| |||| ||||| | ||||| ||| | || |||
Sbjct 520270544 CAGTGACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAAGAGGGCATCCCCCCTGA 520270603
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
|||||| | | || | ||| ||||| || ||||||||| | || || || ||
Sbjct 520270604 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 520270663
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCAT 25035
|| ||| |||||||| |||| || |||
Sbjct 520270664 CAACATCCAGAAAGAATCCACCCTCCAT 520270691
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||||||||| || ||||| || ||||| || || ||| | || || ||| | ||
Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | ||| |||| ||| || | ||||||||| | || ||||||
Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| | | || | ||| || || || ||||||||| || || || |||| |
Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || ||||| |||| || || || || | || ||| | ||||||
Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 204601967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418278428030720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |