Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6 111 3e-19 seq2 111 3e-19 seq1 84.2 4e-11 >seq6 Length=292091736 Score = 111 bits (122), Expect = 3e-19 Identities = 215/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || ||||| ||||||||||||||||||||| |||| | || |||||||| |||||| | Sbjct 153786311 GCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCCC 153786370 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | ||||||| | || | || ||||| || ||| || || || Sbjct 153786371 AAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAATTTATTAGCAGAGATGAG 153786430 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||| | ||| | || ||||| ||| | |||| ||| | | || | | || ||| Sbjct 153786431 GGTTTACATTGTGATTTTGCCTGCTTAATGTTCAAACA---CCTGGTACACAAGCCTTCA 153786487 Query 102101 AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACA 102160 |||| | ||||| || | || || |||| ||||| || ||| | || Sbjct 153786488 GAGGAAAAAGTGAAAGAAATGATCGTCAATGCTGTTAGAATAGAACAGGAGTTTTTGACT 153786547 Query 102161 GTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAA 102220 | | ||||||| || || | |||||||| |||| || |||| || || || ||| Sbjct 153786548 GAAGCTTTGCCTGTAAAGTTGATTGGAATGAATTGCACTTTAATGAAGCAATATATCGAA 153786607 Query 102221 TTTGTGGCAGATAAACT 102237 ||||| ||||| | ||| Sbjct 153786608 TTTGTAGCAGACAGACT 153786624 >seq2 Length=541556283 Score = 111 bits (122), Expect = 3e-19 Identities = 222/326 (68%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || ||||| ||||||||||||||||||||| |||| | || |||||||| |||| Sbjct 435770664 TTGTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCT 435770723 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | ||| | ||||||| | || | || ||||| | ||| || | Sbjct 435770724 GGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAACTTATTAGCAGAG 435770783 Query 102036 ACGAAGGTCTTCATCGCGA-CTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 | || | | | ||| | || ||||| ||| | |||| ||| | | ||| | | Sbjct 435770784 ATGAGGATTTACATTGTGATTTTTGCCTGCTTAATGTTCAAACA---CCTGGTTCACAAG 435770840 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATT---GTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 || ||| |||| | |||||| |||| | || || |||| ||||| || Sbjct 435770841 CCTTCAGAGGAAAAAGTGAAAGAAATTATCGTCAGT---GCTGTTAGAATAGAACAGGAG 435770897 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || | || | | ||| | | ||||| | |||||||| |||| || |||| || Sbjct 435770898 TTCTTGACTGAACCTTTGCATATAAAATTGATTGGAATGAATTGCACTTTAATGAAGCAA 435770957 Query 102212 TACATTGAATTTGTGGCAGATAAACT 102237 |||||||||||||| ||||| | ||| Sbjct 435770958 TACATTGAATTTGTAGCAGACAGACT 435770983 >seq1 Length=748055161 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || ||||| ||||||||||||||||||||| |||| | || |||||||| |||||| Sbjct 529237756 GTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 529237697 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | ||| | ||||||| | || | || ||||| Sbjct 529237696 CTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGA 529237653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989520401910280