Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 327 1e-84 seq2 298 5e-76 seq1 125 7e-24 seq3 120 3e-22 >seq6 Length=292091736 Score = 327 bits (362), Expect = 1e-84 Identities = 611/888 (69%), Gaps = 16/888 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| ||||| | |||||||| | |||| || | ||||| || ||||| || ||||| | Sbjct 153786751 CACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCGAAGAAGTTAGTTTTCCCTTCCA 153786693 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 || |||| ||||||| ||| |||| | | | | || | || | || ||| Sbjct 153786692 AAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTA 153786636 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | | ||| ||||| || ||||| ||||| || ||||||| ||||||| Sbjct 153786635 GTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCA 153786576 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || | | || || | ||| | ||||||||||||| |||||| |||| |||| Sbjct 153786575 TTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCAT 153786516 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 | ||| || | | ||||| || || |||| | ||||| ||||||| Sbjct 153786515 TGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTA 153786456 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 | || |||||||||||||||||||| || ||||| || || | |||||| ||||| |||| Sbjct 153786455 AGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTA 153786396 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 |||| ||||| || |||||||| || ||| ||||| | ||||| ||||||||||||| Sbjct 153786395 ATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 153786336 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATA 11807 | ||||| || || |||||||| ||| | || | ||| |||||| ||| | || | Sbjct 153786335 AGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATAT--GTTGCTTCTTTGTC 153786278 Query 11808 TCCATT---TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||| | | |||||| |||||||||||||| || || | |||||| || || | Sbjct 153786277 CCCAATCCATCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCAT 153786218 Query 11865 T--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | | | |||| | ||||| || || |||| |||||| || || | | |||||| Sbjct 153786217 TGAAGAGAAATTC--CCTTTCTTTAGGGTC-CTTA-ATATGTGTCAATAAGAAGACTATA 153786162 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||| ||||| ||||| |||| || ||||| || |||||||| || || || |||| Sbjct 153786161 CATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGT 153786102 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 |||||| || ||| | | | |||| |||||||| || |||||||| | Sbjct 153786101 TACCTGTACTTCTTGGCTAAACCGCTTCAACCAATTTTCATTTACTATGCCATCACTTGC 153786042 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 |||||| || ||| | || ||| ||||| || ||||| | || | ||||| Sbjct 153786041 TGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCA 153785982 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 | | | ||| || || | ||| || || ||| | ||||| || ||| ||| || Sbjct 153785981 GTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTT 153785922 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||||| | || || ||||| |||| ||| ||||| || || || Sbjct 153785921 CTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 298 bits (330), Expect = 5e-76 Identities = 604/891 (68%), Gaps = 13/891 (1%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| ||||| | |||||||| | |||| ||||| || ||||| || ||||| | Sbjct 435771113 CACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAA 435771054 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 || |||| ||||||||| ||| ||||| | | | | || | || | |||||| Sbjct 435771053 AGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAG 435770994 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 || | | ||| ||||| || ||||| || || || ||||||| |||||||| Sbjct 435770993 TTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCAT 435770934 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || | | | | | || | ||||| ||||||| |||||| |||| ||| Sbjct 435770933 TCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCACT 435770874 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 | ||| || | | ||||| || || || | | ||||| |||||||| Sbjct 435770873 GACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAA 435770814 Query 11629 ACACGCAAAA-TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || |||||| |||||||||||| | || ||||| || || |||||||| ||||| |||| Sbjct 435770813 GCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTA 435770754 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 |||| ||||| || |||||||| || | ||| ||||| | ||||| ||||||||||||| Sbjct 435770753 ATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 435770694 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT- 11806 | ||||| || || |||||||| ||||| || ||| |||||| ||| | || | Sbjct 435770693 AGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATAT--GTTGCTTCTTTGTC 435770636 Query 11807 ----ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 |||||| | |||||| |||||||||||||| || || | |||||| || || Sbjct 435770635 CCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGC 435770576 Query 11863 GTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || | | |||| | ||||| || || | | ||| || || || | | | || Sbjct 435770575 ATTGAAGAGAAATTC--CCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTA 435770518 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATC-GTGCCTC 11979 |||||||| ||||| || | ||||| | ||||| || |||||||| || | | || || Sbjct 435770517 TACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTC 435770458 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || || ||| || ||| | ||| | ||||| ||||||| || |||||||| Sbjct 435770457 TGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACT 435770398 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 | |||||| || |||| | ||| ||| ||||| || || || | || || Sbjct 435770397 TGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTC 435770338 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 ||| | | | ||| || || | ||| || || ||| | ||||| || ||| ||| Sbjct 435770337 CCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGA 435770278 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || |||||||| | ||| || ||||| |||| ||| ||||| || || || Sbjct 435770277 TTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 435770227 >seq1 Length=748055161 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| |||||||| ||||| || |||||||| || Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || |||||||| ||| Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 529237755 ACGACACGTTCACC 529237768 >seq3 Length=527952102 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 ||||||| ||| || |||||||| || || || | ||| ||||| | |||| ||||| Sbjct 368168863 TCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTTTA 368168922 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| |||||||||||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 368168923 AGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAGCA 368168982 Query 11774 ACTACTCTTTCTCC 11787 || ||||||||||| Sbjct 368168983 ACCACTCTTTCTCC 368168996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468495423495040