Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 376 3e-99 seq2 358 9e-94 seq8 120 4e-22 seq3 114 2e-20 seq4 111 2e-19 seq1 111 2e-19 >seq6 Length=292091736 Score = 376 bits (416), Expect = 3e-99 Identities = 624/893 (70%), Gaps = 16/893 (2%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| ||||||||| | || ||||| || || | || ||||| || |||||||| ||| Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || || || |||| |||| ||||| ||| |||| | || |||| || |||| Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 | | ||| | || | ||| ||||| |||||||| |||||| ||||| | ||| Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 |||||||| || | || || || | ||| |||| | ||| || ||||| || || Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 36149 || | || || | | ||| |||| || || || ||| | ||||| | Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGG--TGTTTGA 153786462 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| || || || ||||| || |||| |||||| ||||| ||||| ||||| || |||| Sbjct 153786461 ACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAA 153786402 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || | ||| ||||||| || || || || |||| |||||||| ||||| || |||| Sbjct 153786401 AAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAG 153786342 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--- 36326 ||||||| |||||||| ||||| ||||| || || | || ||||| || Sbjct 153786341 AAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTT 153786282 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 |||| ||||| | ||||| || || |||||||| |||||||| | ||| || | Sbjct 153786281 TGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAA 153786224 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | ||||| |||||| | | |||| ||| || |||| ||||| ||||| | ||||| Sbjct 153786223 TGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA--TATGTGTCAATAAGAAGAC 153786166 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||||||||| ||||| | ||| | || || ||||| || || ||||| || | || | Sbjct 153786165 TATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTT 153786106 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCG-TTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 | || | |||||||||| | ||| || ||| | |||||||||| ||||| || ||| Sbjct 153786105 CTGTTACCTGTACTTCTTGGCTAAACCGCTTCAAC-CAATTTTCATTTACTATGCCATCA 153786047 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || |||||||| ||| | || || || ||| || || || |||| | | | | Sbjct 153786046 CTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTT 153785987 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| | | ||||| ||||| | |||||| || || ||||||| || || |||||| Sbjct 153785986 TCCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCT 153785927 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || |||||||| | || |||||||| || | ||| || || || ||||| Sbjct 153785926 GCTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 358 bits (396), Expect = 9e-94 Identities = 621/894 (69%), Gaps = 9/894 (1%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| ||||||||| | || ||||| || || | || ||||| || |||||||| ||| Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || || || ||||| ||||| ||||| |||||||| | || |||| || |||| Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 || | ||| | || | ||| ||||| |||||||| || ||| ||||| | ||| Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 36032 TTCATTCCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||||||| || || |||| || || || |||| | || || ||||| || || Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAA-AGGTTCAGTCAAGAACTCCTGTTCTATTCTAAC 435770880 Query 36091 CGCGTCTGTT-ATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 36149 || ||| ||||| | | ||| |||| || || | | | ||||| | Sbjct 435770879 AGCA-CTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGA 435770821 Query 36150 ACATCAAACATGCGAAA-TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || || ||| || || |||| | |||| ||||| ||||| | ||| || ||| Sbjct 435770820 ACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAA 435770761 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||| ||||||| || || || || ||||| |||||||| ||||| || ||| Sbjct 435770760 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 435770701 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-- 36326 |||||||| |||||||| ||||| ||||| || | || || ||||| || Sbjct 435770700 GAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCT 435770641 Query 36327 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 |||| ||||| | ||||| || || |||||||| |||||||| | ||| || Sbjct 435770640 TTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCA 435770581 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||||| |||||| | | |||| ||| || |||| ||| || ||||| | |||| Sbjct 435770580 ATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGA 435770521 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||||||||| ||||| ||| | || || | ||||| || || ||||| || | | | Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461 Query 36506 T-CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 | | || | || ||||||| | ||| || || | ||||||||||| | ||| || || Sbjct 435770460 TTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATC 435770401 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||| |||||||| || || || ||||| ||| || || || || | | | | Sbjct 435770400 ACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGC 435770341 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| | | ||||| ||||| | |||||| || || ||||||| || || |||| Sbjct 435770340 TTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTA 435770281 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || |||||||| | ||| |||||||| || | ||| || || || ||||| Sbjct 435770280 TGATTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 435770227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 83796 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 83855 || || ||||||||||| |||||||| || ||||| ||| | |||||| ||||| ||| Sbjct 109802022 GTCATTGGTATTGATGAGGGACAGTTTTTCCCAGATATTATGGAATTCAGTGAGACCATG 109802081 Query 83856 GCAAACGAAGGAAAAATAGTTATAGTAGCAGCACTCGATGGGACATTTCAACGTAAACCG 83915 ||||| | || || | | | || ||||| || || |||||||| ||||| | || | Sbjct 109802082 GCAAATGCTGGGAAGACAATAATTGTAGCTGCCCTGGATGGGACCTTTCAGAGGAAGGCA 109802141 Query 83916 TTTAATAATATCTTGGATATTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGTG 83975 ||| |||||| | | | | ||| | | || | ||| | |||||||| ||||| Sbjct 109802142 TTTGGGAATATCCTAAACTTGGTGCCACTGGCAGAGAGTGTGTTGAAACTAACAACAGTG 109802201 Query 83976 TGTATGAAATGCTT 83989 || ||| | ||||| Sbjct 109802202 TGCATGGAGTGCTT 109802215 >seq8 Length=312544902 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9229 ATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCA 9288 |||| |||||| || |||| || | | || || |||| |||||||||||||| ||||| Sbjct 32470660 ATTTTTTATTAAATGCTTCTAATAAACGCAATAGGTGCAGGAACAGATTGATGACATCCA 32470601 Query 9289 AGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGT 9348 |||||| ||||| | || || | ||| |||||||| || || ||||| || || | Sbjct 32470600 AGTAGAGGTTGATGGCAGCCAATATATACTCTTCAGGGGACAGTTTATGCATCAGAAGAT 32470541 Query 9349 GCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCT 9408 | || ||||| || |||||||| ||||| | ||| || || | ||||| | || | || Sbjct 32470540 GAGTATCATAAATGATGAATCCACAGAACAGAAGAGCTCCCATCGCAGAAAAGATTACCT 32470481 Query 9409 CCACTGTTTCA 9419 ||||| |||| Sbjct 32470480 CCACTAATTCA 32470470 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 ccTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| |||||||||||||| || || ||||| || ||||| | ||||| Sbjct 32464251 CCTGCTCCTAATTTGCTGAAATCTCTCTTGGACTGGAGAGTGTAGAGAGTCAAACCAAGA 32464192 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||||||||| |||| ||| ||||| || | ||| |||| |||||||||||| || || Sbjct 32464191 AACACTGCAGTCGTCAACATAAAAGCATGGAGAACAACATACACATCATAGAATGTCAC 32464133 >seq3 Length=527952102 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||| ||| || | ||| ||||| || |||||||| ||||| || || | ||||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 ||||||| ||||| | ||||| || || || |||||||| ||||| || || ||||| | Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||| ||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 Score = 95.1 bits (104), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| | ||||| || ||||||| ||||| ||||||||| |||||||||||| || Sbjct 368183642 ACCTCTTCAGCAGTCCAGAAGGATGCCTGTGCCTGTTTATACATCTTCCAGATGTCAGGA 368183701 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || |||||||| ||||| ||||||| Sbjct 368183702 TACTGAATTGGGAAAATGACAAATC 368183726 >seq4 Length=435153693 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| ||||||||||| || | ||| || || || || || || |||| | Sbjct 349039782 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 349039723 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || || | || || | || || ||| |||| || |||| ||||| | Sbjct 349039722 TGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGTCTA 349039663 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 |||| || || || || ||| | |||| |||||||||||| ||||| | |||| Sbjct 349039662 ATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 66507 |||| | || || |||||||| | ||| || || || || ||||||||| | || || | Sbjct 349043620 GACGGTTGGTGCCTGCATTAAAAAGGGTGGGGGAGGCATGAGTAAACCATCTCTCTGAGA 349043561 Query 66508 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 66567 | || || || || |||||||| | || || || || ||||| || || | || | Sbjct 349043560 GAAGGTTATAGGTTTCAATAGCAGCATCAATGTCATCTTTGTGAATCCCCACAGACACTC 349043501 Query 66568 GCATTAACATGTGCTGAGGTCTTTCA 66593 ||||| |||||||||||||| |||| Sbjct 349043500 TCATTAGCATGTGCTGAGGTCGTTCA 349043475 >seq1 Length=748055161 Score = 111 bits (122), Expect = 2e-19 Identities = 196/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 83796 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 83855 || || ||||||||||| |||||||| || ||||||||||| |||||| ||||| ||| Sbjct 329235972 GTCATTGGTATTGATGAGGGACAGTTTTTCCCAGACATTGTAGAATTCAGTGAGACCATG 329236031 Query 83856 GCAAACGAAGGAAAAATAGTTATAGTAGCAGCACTCGATGGGACATTTCAACGTAAACCG 83915 ||||| | || || | | | || ||||| ||||| |||||||| ||||| | || | Sbjct 329236032 GCAAATGCTGGGAAGACAATAATTGTAGCTGCACTAGATGGGACCTTTCAGAGGAAGGCA 329236091 Query 83916 TTTAATAATATCTTGGATATTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGTG 83975 || |||||| | | | || ||| | | || | |||| ||||| | |||||| Sbjct 329236092 TTGGGGAATATCCTAAACTTGATGCCACTGACAGAGAGTATGGTGAAACTGATAGCAGTG 329236151 Query 83976 TGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTAGG--TGCAGAAACCGAGA 84033 || ||| | ||||| ||| ||| | | | | || || | || || ||||| ||| Sbjct 329236152 TGCATGGAGTGCTTCCGGGAAGCTGCTTATACCAAGAGACTGGGGATGGAGAAA--GAGG 329236209 Query 84034 TAGAAATAATAGGAGGTAATGGTATGTATCAATCTGTGTGTAGA 84077 | || | || || || || | ||||| ||||||||| || Sbjct 329236210 TCGAGGTGATCGGTGGCGCTGACAAATATCACTCTGTGTGTCGA 329236253 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| || ||||| || | ||| ||||||| || || || | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 36300 C 36300 | Sbjct 529237753 C 529237753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 |||| ||| || |||| ||| || ||||| | ||||||||||||||| ||||| |||| Sbjct 529239608 TTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 529239667 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 |||| || || ||||| || || ||||| || | || || || | |||||||||| Sbjct 529239668 TTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCT 529239723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658131532565440