Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq2 102 7e-17 >seq3 Length=527952102 Score = 127 bits (140), Expect = 2e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| |||||| |||| || || || |||| ||| ||||| ||||| |||| Sbjct 265126892 TCAGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACG 265126833 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | |||||||||||||| || | || | |||||| ||||| ||||| ||||| || | Sbjct 265126832 GCACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTG 265126773 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 | ||||| |||||||| | | |||| || ||||| | ||||| Sbjct 265126772 CTACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCAT 265126730 Score = 116 bits (128), Expect = 3e-21 Identities = 247/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || ||||||||||| ||||| ||||| || || || ||| ||| Sbjct 37329043 ACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAGTGATCATGTAGGTGAGCAGGAAGTAA 37329102 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| ||| | ||||| ||||||| |||||| || | || |||||| || || ||| Sbjct 37329103 CTGGCAATGCTGAACGGCACCCCGATGCCCATATCTCCAGATTGCTGGTATAGTTGACAG 37329162 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || ||||| || | ||||| ||| |||| | | | || || ||||| | ||||| Sbjct 37329163 GAAAGCTCTCCGTTCACTACGTAGAACGGACAGAGAGC-TGGCATGGAGGCAAGGCCATG 37329221 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | || || || ||| | |||||||||| ||| | | || | || | Sbjct 37329222 AGAGGAAGATCTTTTGGATTCTAAGCGCACATAATGATCCTTCTGTCATCAGGGTTGGTT 37329281 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || ||| || || | | ||||| ||||| || || || || | | || Sbjct 37329282 TTGATTTTGTCAGTGACTT--TGTAGCTGATCCACTCCTTGCCCAGAATAATCTGTGTTC 37329339 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | | ||||| || ||||||||||||||||||||||| || ||| || | |||| ||| Sbjct 37329340 ATCTCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAC-CCTGTCCCAAATCT 37329398 Query 21333 CCCTC 21337 || || Sbjct 37329399 CCTTC 37329403 >seq2 Length=541556283 Score = 102 bits (112), Expect = 7e-17 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 20943 TTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACG 21002 ||||| || || || || |||| ||| | ||||| || || || ||||||| |||| | Sbjct 459841153 TTGTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATG 459841094 Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 |||| |||| || || || |||| ||| |||| |||||| ||| | | ||||||||| Sbjct 459841093 TGAGTGATCT--TAGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCC 459841036 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 || || |||| |||||| ||||| ||||| ||||| Sbjct 459841035 ATATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCTC 459840998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427749848983680