Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq6 105 5e-18 seq2 87.8 1e-12 >seq6 Length=292091736 Score = 105 bits (116), Expect = 5e-18 Identities = 373/567 (66%), Gaps = 43/567 (8%) Strand=Plus/Plus Query 22344 CATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGA 22403 |||||| ||||| || | || || || ||||| | |||||||||||||||| || || Sbjct 153785912 CATGTATAAGAAAGCAGAGGCCTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGA 153785971 Query 22404 TGTACGCCATTGGACAGAAAAACTGACCGAGGCTGA-GCGCAGG--TTCATGTCTCACAT 22460 | | | || ||| |||| ||| || |||| | | || ||||| |||||| | Sbjct 153785972 TATTCAGCACTGG---GAAACTTTGA---AGTCTGACGAGAAGTACTTCATATCTCACGT 153786025 Query 22461 ACTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGTGCAA--- 22514 | | ||||||||| ||| |||||||| ||| || || ||| || | Sbjct 153786026 GTTAGGGTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAA--TTGGTTGAAGCGG 153786080 Query 22515 TTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGC 22574 ||| || || ||| | || | | |||||||| | |||||||| || || | || Sbjct 153786081 TTTAGCCAA-GAAGT--AC-AGGTAACAGAAGCCCGCTGCTTCTATGGCTTCCAAATTGC 153786136 Query 22575 AATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAG----CTA 22630 ||||| ||||| |||| |||||||||||| || || ||| ||||| || ||| Sbjct 153786137 AATGGGAAATAGACATTCTGAAATGTATAGTCTTCTTATTGACACATATTAAGGACCCTA 153786196 Query 22631 AAGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAA 22688 |||| | || || | |||| || |||| | || ||||||||| || Sbjct 153786197 AAGAAAGGGAAT-----TTCTCTTCAATGCCATTGAAACACTACCTTGTGTTAAAAAGAA 153786251 Query 22689 GGCACAGTGGGCTGCACAATGGCTGAATGCCACACATAAGTC---TATCGCAACACGTCT 22745 || | ||||| | |||| | | ||| | ||| ||| | | |||| | Sbjct 153786252 AGCTGACTGGGC--CTTGATGGATTGGGG--ACAAAGAAGCAACATATGGTGA-ACGTGT 153786306 Query 22746 CTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTG 22805 || ||||| || |||||||| || | |||||||| || ||||| |||||||||| Sbjct 153786307 TGCAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTG 153786366 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 || |||||||| | ||||| || || | ||||| || || || |||||| | || Sbjct 153786367 GCCCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAATTTATTAGCAGAGA 153786426 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTG 22892 || ||| |||| ||||| ||||| || Sbjct 153786427 TGAGGGTTTACATTGTGATTTTGCCTG 153786453 >seq2 Length=541556283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || ||||| || |||||||| || | |||||||| || ||||| ||||||||||||| Sbjct 435770669 GCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 435770728 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| | ||||| || || | ||||| || || | |||||| | || || Sbjct 435770729 AAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAACTTATTAGCAGAGATGAG 435770788 Query 22870 GGTCTACACTGTGACTTT 22887 | | |||| ||||| ||| Sbjct 435770789 GATTTACATTGTGATTTT 435770806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356211822549448