Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 367 2e-96 seq6 365 6e-96 seq4 120 4e-22 seq3 120 4e-22 seq1 120 4e-22 >seq2 Length=541556283 Score = 367 bits (406), Expect = 2e-96 Identities = 630/906 (70%), Gaps = 9/906 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||||||| | || ||||| || || | || ||||| || |||||||| ||| Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 ||||| || ||||| ||||| |||||||| ||||| | || |||| || |||| Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 || | ||| | || | ||| || || |||||||| || ||| ||||| | ||| Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 49834 TTCATTCCTAT-AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||||||| || || |||| || || || |||| | || || ||||| || || Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAA-AGGTTCAGTCAAGAACTCCTGTTCTATTCTAAC 435770880 Query 49893 CGCATCTGTT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 ||| ||| ||||| | | || |||| || || || | | ||||| | Sbjct 435770879 AGCA-CTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGA 435770821 Query 49952 ACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || || ||| || || || | | |||| ||||| ||||| ||||| || ||| Sbjct 435770820 ACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAA 435770761 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||||| || || || || ||||| |||||||| ||||| || ||| Sbjct 435770760 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 435770701 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 ||||||||||||||||| ||||| ||||| || |||| || ||||| | | | Sbjct 435770700 GAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCT 435770641 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| ||||| | ||||| || || |||||||| |||||||| | ||||| Sbjct 435770640 TTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCA 435770581 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 |||||||| |||||| | | |||| ||| || |||| |||||| || || | |||| Sbjct 435770580 ATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGA 435770521 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC-TAGC 50306 |||||||||| ||||| ||| | || || | || || || || ||||| || | || Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 || || | || |||||| | ||| || || | ||||||||||| | ||| || || Sbjct 435770460 TTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATC 435770401 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 ||| |||||||| || || || ||||| ||| || | || || | | | | Sbjct 435770400 ACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGC 435770341 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 | ||| | | ||||| ||||| | ||| || || || ||||||| || || |||| Sbjct 435770340 TTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTA 435770281 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 || || |||||||| | ||| |||||||| || | || ||||| || ||||| | || Sbjct 435770280 TGATTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCGCTT 435770221 Query 50547 TGGATT 50552 ||||| Sbjct 435770220 GGGATT 435770215 >seq6 Length=292091736 Score = 365 bits (404), Expect = 6e-96 Identities = 619/891 (69%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||||||| | || ||||| || || | || ||||| || |||||||| ||| Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 ||||| || |||| |||| |||||||| |||| | || |||| || |||| Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 | | ||| | || | ||| || || |||||||| |||||| ||||| | ||| Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 |||||||| || | || || || | ||| |||| | ||| || ||||| || || Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 |||| || || | | || |||| || || || | | ||||| ||| Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAAC 153786460 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 || || || || ||||| || || | |||||| ||||| ||||| | ||| || ||||| Sbjct 153786459 ATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAA 153786400 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || | ||| ||||||| || || || || |||| |||||||| ||||| || |||||| Sbjct 153786399 GTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAA 153786340 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA 50133 |||||||||||||| ||||| ||||| || ||| | || ||||| || ||| Sbjct 153786339 AAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATA--TGTTGCTTCTT 153786282 Query 50134 TGTATCCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 ||| ||| | | ||||| || || |||||||| |||||||| | ||||| ||| Sbjct 153786281 TGTCCCCAATCCATCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATG 153786222 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| |||||| | | |||| ||| || ||| ||| || || || | ||||||| Sbjct 153786221 GCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTA--ATATGTGTCAATAAGAAGACTA 153786164 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| | ||| | || || || || || || ||||| || | || || Sbjct 153786163 TACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCT 153786104 Query 50311 GTAATCTGCACTTCTGTACAAAATCG-TTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || | ||| |||||| | ||| || |||| | |||||||||| ||||| || ||||| Sbjct 153786103 GTTACCTGTACTTCTTGGCTAAACCGCTTCAAC-CAATTTTCATTTACTATGCCATCACT 153786045 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 |||||||| ||| | || || || ||| || | || |||| | | | | | Sbjct 153786044 TGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTC 153785985 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| | | ||||| ||||| | ||| || || || ||||||| || || |||||||| Sbjct 153785984 CCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGC 153785925 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || |||||||| | || |||||||| || | || ||||| || ||||| Sbjct 153785924 TTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq4 Length=435153693 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| |||||||| || || | ||| || || || || ||||| ||||| | Sbjct 349039782 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 349039723 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||||||||| || | || || | || || ||| |||| || |||| ||||| | Sbjct 349039722 TGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGTCTA 349039663 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851 |||| || || || || ||| | |||| |||||||||||| ||||| | |||| Sbjct 349039662 ATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| || || | || || ||| || ||||| || || || || ||||| ||| Sbjct 349054293 TATGTTTCATAGGGGCCATACTCTTTGGCCAACTCACAGCTGGCTTCCAAGGCTCCATAA 349054234 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||| ||||| || |||| ||||| || || || || | || ||||| ||||| Sbjct 349054233 TAAATAGTTTCAAAGATCTGTTTATTCAGTAACTGGGCCTCAGGACTCTCAAAAGGATAT 349054174 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || ||||| || || || | || || || ||||| || || || | ||| | Sbjct 349054173 CTCATCAGGATAAATGCATCAGCCAGACCCTGCACTCCAATTCCAATGGGGCGATGGCGT 349054114 Query 79480 TTATTAGA 79487 ||||| || Sbjct 349054113 TTATTTGA 349054106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 |||| | || || |||||||| | ||| || || || || ||||||||| | || || | Sbjct 349043620 GACGGTTGGTGCCTGCATTAAAAAGGGTGGGGGAGGCATGAGTAAACCATCTCTCTGAGA 349043561 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACAC 80446 | || || || || |||||||| | || || || || ||||| || || | || | Sbjct 349043560 GAAGGTTATAGGTTTCAATAGCAGCATCAATGTCATCTTTGTGAATCCCCACAGACACTC 349043501 Query 80447 GCATTAACATGTGCTGAGGTCTTTCA 80472 ||||| |||||||||||||| |||| Sbjct 349043500 TCATTAGCATGTGCTGAGGTCGTTCA 349043475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || ||||||||||||||||| || ||||| || || | || || || || | || ||| Sbjct 349049289 ACACGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAGAAAAGGTCCCTAGCTCGCTGC 349049230 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || ||||| || ||||| || | ||| ||||| | | | || ||||||| ||| Sbjct 349049229 TCTTCCTTTCCAGTGTTCTTCTTCAAATCAAGGAATTCAAAGACGTCTAAATGCCATGGT 349049170 Query 80059 TCCAAGTATATGGC 80072 |||||||| || || Sbjct 349049169 TCCAAGTAGATAGC 349049156 >seq3 Length=527952102 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| || ||||| ||||| || |||||||| ||||| || || | ||||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 ||||||| ||||| | ||||| || || || ||||| || ||||| || || ||||| | Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | ||| ||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 Score = 96.9 bits (106), Expect = 5e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| | ||||| || ||||||| ||||| ||||||||| |||||||||||| | Sbjct 368183641 TACCTCTTCAGCAGTCCAGAAGGATGCCTGTGCCTGTTTATACATCTTCCAGATGTCAGG 368183700 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 ||| || ||||||||||| ||||||| Sbjct 368183701 ATACTGAATTGGGAAAATGACAAATC 368183726 >seq1 Length=748055161 Score = 120 bits (132), Expect = 4e-22 Identities = 198/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 97689 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 97748 || || ||||| ||||| |||||||| || ||||||||||| |||||| ||||| ||| Sbjct 329235972 GTCATTGGTATTGATGAGGGACAGTTTTTCCCAGACATTGTAGAATTCAGTGAGACCATG 329236031 Query 97749 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTTGATGGGACATTTCAACGTAAACCG 97808 ||||| | || || | | | || ||||| ||||| |||||||| ||||| | || | Sbjct 329236032 GCAAATGCTGGGAAGACAATAATTGTAGCTGCACTAGATGGGACCTTTCAGAGGAAGGCA 329236091 Query 97809 TTTAATAATATCTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTG 97868 || |||||| | || | || ||| | | || | |||| ||||| | || ||| Sbjct 329236092 TTGGGGAATATCCTAAACTTGATGCCACTGACAGAGAGTATGGTGAAACTGATAGCAGTG 329236151 Query 97869 TGTATGAAATGCTTTAAGGAAGCTTCCTTTTCTAAACGATTAGG--TGCAGAAACCGAGA 97926 || ||| | ||||| ||||||| | | | | || || | || || ||||| ||| Sbjct 329236152 TGCATGGAGTGCTTCCGGGAAGCTGCTTATACCAAGAGACTGGGGATGGAGAAA--GAGG 329236209 Query 97927 TAGAGATAATCGGAGGTAATGAAATGTATCAATCGGTGTGTAGA 97970 | ||| | ||||| || ||| | ||||| || |||||| || Sbjct 329236210 TCGAGGTGATCGGTGGCGCTGACAAATATCACTCTGTGTGTCGA 329236253 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| || ||||| || | ||| ||||||| || || || | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 50102 CAAC 50105 | || Sbjct 529237753 CTAC 529237756 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||||||| | || ||||| || || | || ||||| || |||||||||||| Sbjct 529233556 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCT 529233615 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||||| || ||||| ||||| |||||||| ||||| Sbjct 529233616 TCCAAAGAGATATTCTCCATAAAATCAAATGGATT 529233650 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 |||| ||| || |||| |||||| || || | ||||||||||||||| ||||| |||| Sbjct 529239608 TTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 529239667 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 |||| || || || || || || ||||| || | || || || | ||| |||||| Sbjct 529239668 TTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCT 529239723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718223764546240