Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6 403 2e-107 seq2 389 4e-103 seq1 132 5e-26 seq3 87.8 2e-12 >seq6 Length=292091736 Score = 403 bits (446), Expect = 2e-107 Identities = 611/858 (71%), Gaps = 21/858 (2%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||| || |||| |||||||||||||| ||||| || |||| | || | || Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 ||||||| || | | ||| || || | ||| || |||||||| ||||||| ||| Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || | |||||||| | | || ||||| || | |||||| ||| Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || | || || | | | | || | ||||| | | || ||||| || Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAAC 153786460 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 ||||| || |||||||||||||| | ||||||||||| ||||||| ||| |||||||| Sbjct 153786459 ATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAA 153786400 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 |||||||| ||||| || |||||||| || ||| ||||| | ||||| || || ||| Sbjct 153786399 GTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAA 153786340 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| ||||| |||||||| ||||| ||| | ||||| ||| | | ||||| |||| Sbjct 153786339 AAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTG 153786280 Query 14046 TTCGATATCCATTTTCTA-GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 | | ||||| || | ||||| |||| ||| ||||||| | || | ||||||||| Sbjct 153786279 TCCCCAATCCA---TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 153786223 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAG 14162 ||||| || | | ||||| | |||||| || ||| | ||||| |||||||| | Sbjct 153786222 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA----TATGTGTCAATAAGAAGA 153786167 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 |||||||||||||| ||| | ||| |||| || || || || ||||| ||||| | ||| Sbjct 153786166 CTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCT 153786107 Query 14223 TCCG--ACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 || | ||| |||||||| | |||| ||| || |||||||||| ||||| ||| Sbjct 153786106 TCTGTTACC--TGTACTTCTTGGCTAAACCGCTTCAACC-AATTTTCATTTACTATGCCA 153786050 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| |||||||| || | || | || || ||||| | ||| ||| || | Sbjct 153786049 TCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAA 153785990 Query 14340 TTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||| ||| | | || | ||||||||||||||| || || ||| ||||||| || || Sbjct 153785989 GTTTCCCAGTGCTGA-ATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGC 153785931 Query 14399 GACAGCTTTTTTATACAT 14416 | ||||| |||||||| Sbjct 153785930 CTCTGCTTTCTTATACAT 153785913 >seq2 Length=541556283 Score = 389 bits (430), Expect = 4e-103 Identities = 590/833 (71%), Gaps = 10/833 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||| || ||||| ||||||||||||||||||||| || |||| | || | || Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 |||||||| || | | ||| || || | ||| ||||| ||||| ||||||| ||| Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || | ||||| | | | | || || || || | |||||| ||| Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACA 435770879 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || ||||| | | | | || | ||||| | || ||||| || Sbjct 435770878 GCACTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAAC 435770819 Query 13866 ATTAAACACGCAAAA-TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13924 ||||| || |||||| |||||||| | |||||||||| ||||||||||| |||||||| Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759 Query 13925 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGA 13984 |||||||| ||||| || |||||||| || | ||| ||||| | ||||| || || || Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699 Query 13985 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 |||||| ||||| |||||||| ||||| |||| | |||| ||| | | ||||| ||| Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTT 435770639 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 || | |||||| | ||||| |||| ||| ||||||| | || | ||||||||| Sbjct 435770638 GTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 435770579 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAG 14162 ||||| || | | ||||| | ||||||| | ||| ||| || || |||||||| | Sbjct 435770578 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGA 435770521 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC-TAGC 14221 ||||||||||||| |||||| | ||||| | || || || ||||| ||||| | || Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461 Query 14222 TTCCG--ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||| | ||| | |||||| | ||| | || ||||||||||||| | ||| ||| Sbjct 435770460 TTCTGTTACC--TATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCA 435770403 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| |||||||| || || || | | || ||||| | ||| ||| || | Sbjct 435770402 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAA 435770343 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || ||| | | ||||||||||||||| || || ||| ||||||| || Sbjct 435770342 GCTTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAA 435770290 >seq1 Length=748055161 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| |||||||| |||||||| ||||| || |||||||| | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| |||||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 529237753 CTACGACACGTTCACC 529237768 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || || |||||||||||||| ||| Sbjct 529233556 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCT 529233615 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||| || ||||| ||||||||||||||||||||| Sbjct 529233616 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTT 529233651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/122 (78%), Gaps = 9/122 (7%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| ||||||| | ||| ||| || || |||||||| | |||||||||||||| || Sbjct 529239606 CCTT-TCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAATG 529239662 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACT 14237 |||||||||||| || || || || ||||| ||||| | ||||| | ||| |||||| Sbjct 529239663 TATGTTTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACC--TGTACT 529239720 Query 14238 TC 14239 || Sbjct 529239721 TC 529239722 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 13521 AACTAAAAATCAACATCTAATGAAAAAACATTATCGTCT-TTGTT--AGAAATAACGCCC 13577 || |||||||| |||| || | || ||||| |||| ||||| || ||||| | Sbjct 368162193 AATTAAAAATCTGCATCCAAGGTGAAGACATT---GTCTGTTGTTTCAGCCATAACTGCA 368162249 Query 13578 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 | ||||||||| || ||||||||||| || || ||||| |||||||| || ||| Sbjct 368162250 AAGCGTTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATA 368162309 Query 13638 TTTTCCATAAAATCAAATGGATT 13660 |||||||| |||||||| ||||| Sbjct 368162310 TTTTCCATGAAATCAAAGGGATT 368162332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479697921054400