Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq6 376 2e-99
seq2 361 5e-95
seq1 129 6e-25
seq3 87.8 2e-12
>seq6
Length=292091736
Score = 376 bits (416), Expect = 2e-99
Identities = 605/859 (70%), Gaps = 23/859 (3%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || |||||| | |||||||| | ||||| || || || ||||||||||| |||
Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||| || |||| |||||||||| ||| ||||| || |||| | || | ||
Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
||||||| || | | ||| || || | ||| || |||||||| ||||||| |||
Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || | |||||||| | | ||| ||||| || | |||||| |||
Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520
Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653
|| | | || || || | | || | ||||| | | || ||||| ||
Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAAC 153786460
Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713
||||| || |||||||||||||| | ||||||||||| ||||||| ||| ||||||||
Sbjct 153786459 ATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAA 153786400
Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773
|||||||| ||||| || |||||||| || ||| ||||| | || || || || |||
Sbjct 153786399 GTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAA 153786340
Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833
||||| ||||| |||||||| ||||| ||| | ||||| ||| | | ||||| ||||
Sbjct 153786339 AAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTG 153786280
Query 13834 TTTGATATCCATTTTCTA-GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892
| ||||| || | ||||| |||| ||| ||||||| | || | |||||| ||
Sbjct 153786279 TCCCCAATCCA---TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 153786223
Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAG 13950
|||||||| | | |||| | |||||| || ||| | ||||| |||||||| |
Sbjct 153786222 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA----TATGTGTCAATAAGAAGA 153786167
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010
|||||||||||||| ||| | ||| | || || || || || ||||| || || | |||
Sbjct 153786166 CTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCT 153786107
Query 14011 TCTG--ACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067
|||| ||| ||||| || | |||| ||| |||| |||||||| || || |||
Sbjct 153786106 TCTGTTACC--TGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCA 153786050
Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127
||||| |||||||| || | || | || || ||||| | ||| ||| || |
Sbjct 153786049 TCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAA 153785990
Query 14128 TTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185
||| ||| | ||| | ||||||||||||||| || || ||| ||||||| || |
Sbjct 153785989 GTTTCCCAGT--GCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGG 153785932
Query 14186 CGACAGCTTTTTTATACAT 14204
| | ||||| ||||||||
Sbjct 153785931 CCTCTGCTTTCTTATACAT 153785913
>seq2
Length=541556283
Score = 361 bits (400), Expect = 5e-95
Identities = 586/834 (70%), Gaps = 12/834 (1%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || |||||| | |||||||| | ||||| || || || ||||||||||| |||
Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||| || ||||| ||||||||||| ||||||||| || |||| | || | ||
Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|||||||| || | | ||| || || | ||| ||||| ||||| ||||||| |||
Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || | ||||| | | | | ||| || || || | |||||| |||
Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACA 435770879
Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653
|| | ||||| || | | || | ||||| | || ||||| ||
Sbjct 435770878 GCACTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAAC 435770819
Query 13654 ATTAAACACGCAAAA-TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13712
||||| || |||||| |||||||| | |||||||||| ||||||||||| ||||||||
Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759
Query 13713 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 13772
|||||||| ||||| || |||||||| || | ||| ||||| | || || || || ||
Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699
Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832
|||||| ||||| |||||||| ||||| |||| | |||| ||| | | ||||| |||
Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTT 435770639
Query 13833 GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892
|| |||||| | ||||| |||| ||| ||||||| | || | |||||| ||
Sbjct 435770638 GTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 435770579
Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAG 13950
|||||||| | | |||| | ||||||| | ||| ||| || || |||||||| |
Sbjct 435770578 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGA 435770521
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC-TAGC 14009
||||||||||||| |||||| | || || | || || || ||||| || || | ||
Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461
Query 14010 TTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067
||||| ||| | ||| || | ||| | || |||| |||||||| | || |||
Sbjct 435770460 TTCTGTTACC--TATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCA 435770403
Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127
||||| |||||||| || || || | | || ||||| | ||| ||| || |
Sbjct 435770402 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAA 435770343
Query 14128 TTTTTCCAAT-CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
|| ||| | | || | ||||||||||||||| || || ||| ||||||| ||
Sbjct 435770342 GCTTCCCAGTGCTGC-ATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAA 435770290
>seq1
Length=748055161
Score = 129 bits (142), Expect = 6e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| |||||||| |||||||| ||||| || |||||||| |
Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| |||||||| ||||| |
Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 529237753 CTACGACACGTTCACC 529237768
Score = 93.3 bits (102), Expect = 4e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || |||||| | |||||||| | ||||| || || || ||||||||||| |||
Sbjct 529233556 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCT 529233615
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
|||| || ||||| ||||||||||| |||||||||
Sbjct 529233616 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTT 529233651
>seq3
Length=527952102
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 13309 AACTAAAAATCAACATCTAATGAAAAAACATTATCGTCT-TTGTT--AGAAATAACGCCC 13365
|| |||||||| |||| || | || ||||| |||| ||||| || ||||| |
Sbjct 368162193 AATTAAAAATCTGCATCCAAGGTGAAGACATT---GTCTGTTGTTTCAGCCATAACTGCA 368162249
Query 13366 ATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATA 13425
| ||||||||| || |||||||||||||| || ||||| |||||||| || |||
Sbjct 368162250 AAGCGTTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATA 368162309
Query 13426 TTTTCCATAAAATCGAATGGATT 13448
|||||||| ||||| || |||||
Sbjct 368162310 TTTTCCATGAAATCAAAGGGATT 368162332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478558792482240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |