Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 376 2e-99 seq2 361 5e-95 seq1 129 6e-25 seq3 87.8 2e-12 >seq6 Length=292091736 Score = 376 bits (416), Expect = 2e-99 Identities = 605/859 (70%), Gaps = 23/859 (3%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || || || ||||||||||| ||| Sbjct 153786756 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCT 153786697 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||| || |||| |||||||||| ||| ||||| || |||| | || | || Sbjct 153786696 TCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAA 153786640 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 ||||||| || | | ||| || || | ||| || |||||||| ||||||| ||| Sbjct 153786639 GCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA 153786580 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || | |||||||| | | ||| ||||| || | |||||| ||| Sbjct 153786579 TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACA 153786520 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | || || || | | || | ||||| | | || ||||| || Sbjct 153786519 GCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAAC 153786460 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 ||||| || |||||||||||||| | ||||||||||| ||||||| ||| |||||||| Sbjct 153786459 ATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAA 153786400 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 |||||||| ||||| || |||||||| || ||| ||||| | || || || || ||| Sbjct 153786399 GTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAA 153786340 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| ||||| |||||||| ||||| ||| | ||||| ||| | | ||||| |||| Sbjct 153786339 AAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTG 153786280 Query 13834 TTTGATATCCATTTTCTA-GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892 | ||||| || | ||||| |||| ||| ||||||| | || | |||||| || Sbjct 153786279 TCCCCAATCCA---TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 153786223 Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAG 13950 |||||||| | | |||| | |||||| || ||| | ||||| |||||||| | Sbjct 153786222 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA----TATGTGTCAATAAGAAGA 153786167 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||||||||||| ||| | ||| | || || || || || ||||| || || | ||| Sbjct 153786166 CTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCT 153786107 Query 14011 TCTG--ACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 |||| ||| ||||| || | |||| ||| |||| |||||||| || || ||| Sbjct 153786106 TCTGTTACC--TGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCA 153786050 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| |||||||| || | || | || || ||||| | ||| ||| || | Sbjct 153786049 TCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAA 153785990 Query 14128 TTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 ||| ||| | ||| | ||||||||||||||| || || ||| ||||||| || | Sbjct 153785989 GTTTCCCAGT--GCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGG 153785932 Query 14186 CGACAGCTTTTTTATACAT 14204 | | ||||| |||||||| Sbjct 153785931 CCTCTGCTTTCTTATACAT 153785913 >seq2 Length=541556283 Score = 361 bits (400), Expect = 5e-95 Identities = 586/834 (70%), Gaps = 12/834 (1%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || || || ||||||||||| ||| Sbjct 435771118 GACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCT 435771059 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||| || ||||| ||||||||||| ||||||||| || |||| | || | || Sbjct 435771058 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAA 435770999 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 |||||||| || | | ||| || || | ||| ||||| ||||| ||||||| ||| Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || | ||||| | | | | ||| || || || | |||||| ||| Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACA 435770879 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | ||||| || | | || | ||||| | || ||||| || Sbjct 435770878 GCACTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAAC 435770819 Query 13654 ATTAAACACGCAAAA-TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13712 ||||| || |||||| |||||||| | |||||||||| ||||||||||| |||||||| Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759 Query 13713 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 13772 |||||||| ||||| || |||||||| || | ||| ||||| | || || || || || Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699 Query 13773 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 |||||| ||||| |||||||| ||||| |||| | |||| ||| | | ||||| ||| Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTT 435770639 Query 13833 GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892 || |||||| | ||||| |||| ||| ||||||| | || | |||||| || Sbjct 435770638 GTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAAT 435770579 Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAG 13950 |||||||| | | |||| | ||||||| | ||| ||| || || |||||||| | Sbjct 435770578 GGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTT--AATATAAGTGTCAATAAGAAGA 435770521 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC-TAGC 14009 ||||||||||||| |||||| | || || | || || || ||||| || || | || Sbjct 435770520 TTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGC 435770461 Query 14010 TTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 ||||| ||| | ||| || | ||| | || |||| |||||||| | || ||| Sbjct 435770460 TTCTGTTACC--TATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCA 435770403 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| |||||||| || || || | | || ||||| | ||| ||| || | Sbjct 435770402 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAA 435770343 Query 14128 TTTTTCCAAT-CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || ||| | | || | ||||||||||||||| || || ||| ||||||| || Sbjct 435770342 GCTTCCCAGTGCTGC-ATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAA 435770290 >seq1 Length=748055161 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| |||||||| |||||||| ||||| || |||||||| | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| |||||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 529237753 CTACGACACGTTCACC 529237768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || || || ||||||||||| ||| Sbjct 529233556 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCT 529233615 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||| || ||||| ||||||||||| ||||||||| Sbjct 529233616 TCCAAAGAGATATTCTCCATAAAATCAAATGGATTT 529233651 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 13309 AACTAAAAATCAACATCTAATGAAAAAACATTATCGTCT-TTGTT--AGAAATAACGCCC 13365 || |||||||| |||| || | || ||||| |||| ||||| || ||||| | Sbjct 368162193 AATTAAAAATCTGCATCCAAGGTGAAGACATT---GTCTGTTGTTTCAGCCATAACTGCA 368162249 Query 13366 ATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATA 13425 | ||||||||| || |||||||||||||| || ||||| |||||||| || ||| Sbjct 368162250 AAGCGTTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATA 368162309 Query 13426 TTTTCCATAAAATCGAATGGATT 13448 |||||||| ||||| || ||||| Sbjct 368162310 TTTTCCATGAAATCAAAGGGATT 368162332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478558792482240