Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 369 5e-97 seq2 351 1e-91 seq4 116 5e-21 seq1 114 2e-20 seq3 111 2e-19 >seq6 Length=292091736 Score = 369 bits (408), Expect = 5e-97 Identities = 648/935 (69%), Gaps = 19/935 (2%) Strand=Plus/Minus Query 41720 TAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTT 41776 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 153786798 TAGAAGTCTGCATCCAAGGTAAAAGAATTTTCAGTTGGACTTGACATCACTCCCATTCTC 153786739 Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 || ||||| || || | || ||||| || ||||| || |||||||| || |||| || Sbjct 153786738 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATAT---CC 153786682 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 || |||||||| |||| | || |||| || |||| | | ||| | || | | Sbjct 153786681 ATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCAACATAAGT 153786622 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 || ||||| | ||||| |||||| ||||| | ||||||||||| || | || Sbjct 153786621 CTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTT 153786562 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || || | ||| |||| | ||| || ||||| || || || | || || | Sbjct 153786561 ACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGATCATTTCT 153786502 Query 42017 CTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | ||| |||| || || || ||| | ||||| ||||| || || || |||| Sbjct 153786501 TTCACTTTTTCCTCTGAAGGCTTGTGTACCAGG--TGTTTGAACATTAAGCAGGCAAAAT 153786444 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | || || | |||||||||||| ||||| ||||| || ||||| || | ||| ||||||| Sbjct 153786443 CACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTA 153786384 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 || || || || |||| ||||| || ||||| || |||||||||||||||||||| | Sbjct 153786383 AACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAA 153786324 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTT 42251 |||| ||||| || || | || ||||| || |||| ||||| | Sbjct 153786323 CTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATCCA--TCA 153786266 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 ||||| || || |||||||| |||||||| | ||||| |||||||| |||||| | | Sbjct 153786265 AGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAATT 153786206 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 |||| ||| || |||| ||||| || || | ||||||||||||||| ||||| Sbjct 153786205 CCCTTTCTTTAGGGTCCTTAA--TATGTGTCAATAAGAAGACTATACATTTCAGAATGTC 153786148 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 | ||| | || || || || || || ||||| || | ||| || || |||||||||||| Sbjct 153786147 TATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCTT 153786088 Query 42432 TACAAAATCG-TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 | ||| || |||| | ||||||| || ||||| || ||||| |||||||| ||| | Sbjct 153786087 GGCTAAACCGCTTCAAC-CAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAACCCT 153786029 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCT 42550 || || || ||| || || || ||||| | | || | | ||| | | ||||| Sbjct 153786028 AACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCAGTGCTGAATATCC 153785969 Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||| | ||| || || || | ||||| || || || ||||| || |||||||| | Sbjct 153785968 TTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGT 153785909 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || ||||| || | ||| ||||| || ||||| Sbjct 153785908 CAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 351 bits (388), Expect = 1e-91 Identities = 652/948 (69%), Gaps = 12/948 (1%) Strand=Plus/Minus Query 41720 TAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTT 41776 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 435771160 TAGAAGTCTCCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 435771101 Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 || ||||| || || | || ||||| || ||||| || |||||||| || ||||| ||| Sbjct 435771100 TGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCC 435771041 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 || |||||||| ||||| | || |||| || |||| || | ||| | || | | Sbjct 435771040 ATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGTTCCAACATAAGT 435770981 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTT 41955 || ||||| | ||||| || ||| ||||| | ||||||||||| || || ||| Sbjct 435770980 CTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTTT 435770921 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT-ATAATAG 42014 | || || || |||| | || || ||||| || || || ||| ||||| Sbjct 435770920 ATATGCAA-AGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGATAATTT 435770863 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA- 42073 | | ||| |||| || || | | | ||||| ||||| || || || ||| Sbjct 435770862 CTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGCAAAAA 435770803 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || || || | | |||||||||| ||||| | ||| || ||||| || | ||| |||||| Sbjct 435770802 TCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATT 435770743 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 | || || || || ||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 435770742 AAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCA 435770683 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 42250 ||||| ||||| || | || || ||||| | | |||| ||||| | Sbjct 435770682 ACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATCCATCAT 435770623 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || || |||||||| |||||||| | ||||| |||||||| |||||| | Sbjct 435770622 AAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAAT 435770563 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | |||| ||| || |||| ||| || || || | |||| |||||||||| ||||| Sbjct 435770562 TCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGAATGT 435770503 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC-TGGCCTCGGTAACCTGTACTTC 42429 ||| | || || | || || || || ||||| || | ||| || || |||| |||||| Sbjct 435770502 ATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTATACTTC 435770443 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | ||| || || | |||||||| || | ||| || ||||| |||||||| || || Sbjct 435770442 TTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAGC 435770383 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || ||||| ||| || || || || || | | || | ||| | | ||||| Sbjct 435770382 TAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCCCAGTGCTGCATATC 435770323 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 ||||| | ||| || || || | ||||| || || || | || || |||||||| | Sbjct 435770322 CTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTATACATGTG 435770263 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| || ||||| || | ||| ||||| || ||||| | || ||||| Sbjct 435770262 CCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCGCTTGGGATT 435770215 >seq4 Length=435153693 Score = 116 bits (128), Expect = 5e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| || || | ||| || || || || ||||| |||| | Sbjct 349039782 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 349039723 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||||||||| || | || || | || || ||| |||| || |||| ||||| | Sbjct 349039722 TGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGTCTA 349039663 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| || || || || ||| | |||| |||||||||||| ||||| | |||| Sbjct 349039662 ATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||||||| || || || || | | || ||| | ||||| || || || || Sbjct 349054302 GAGCCTTCATATGTTTCATAGGGGCCATACTCTTTGGCCAACTCACAGCTGGCTTCCAAG 349054243 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| ||||| || |||| ||||| || || || || || || ||| Sbjct 349054242 GCTCCATAATAAATAGTTTCAAAGATCTGTTTATTCAGTAACTGGGCCTCAGGACTCTCA 349054183 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || || || | || || || ||||| || || || Sbjct 349054182 AAAGGATATCTCATCAGGATAAATGCATCAGCCAGACCCTGCACTCCAATTCCAATGGGG 349054123 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 349054122 CGATGGCGTTTATTTGA 349054106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || ||||||||||||||||| || ||||| || || | || || || || | || ||| Sbjct 349049289 ACACGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAGAAAAGGTCCCTAGCTCGCTGC 349049230 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || ||||| || ||||| || | ||| ||||| | | | || ||||||| ||| Sbjct 349049229 TCTTCCTTTCCAGTGTTCTTCTTCAAATCAAGGAATTCAAAGACGTCTAAATGCCATGGT 349049170 Query 72142 TCCAAGTATATGGC 72155 |||||||| || || Sbjct 349049169 TCCAAGTAGATAGC 349049156 >seq1 Length=748055161 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| || ||||| || | ||| ||||||| || || || | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 42207 C 42207 | Sbjct 529237753 C 529237753 Score = 107 bits (118), Expect = 3e-18 Identities = 194/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 89746 CTGTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTA 89805 |||| || ||||| ||||| |||||||| || ||||||||||| |||||| ||||| | Sbjct 329235970 CTGTCATTGGTATTGATGAGGGACAGTTTTTCCCAGACATTGTAGAATTCAGTGAGACCA 329236029 Query 89806 TGGCAAACGAAGGAAAGATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAAC 89865 ||||||| | || |||| | | || ||||| ||||| |||||||| ||||| | || Sbjct 329236030 TGGCAAATGCTGGGAAGACAATAATTGTAGCTGCACTAGATGGGACCTTTCAGAGGAAGG 329236089 Query 89866 CGTTTAATAATATATTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTG 89925 | || ||||| | | | || ||| | | || | |||| ||||| | || | Sbjct 329236090 CATTGGGGAATATCCTAAACTTGATGCCACTGACAGAGAGTATGGTGAAACTGATAGCAG 329236149 Query 89926 TGTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCCAAACGATTGGGTACAGAAACCGAGA 89985 |||| ||| | ||||| ||| ||| | | | |||| || |||| | || | ||| Sbjct 329236150 TGTGCATGGAGTGCTTCCGGGAAGCTGCTTATACCAAGAGACTGGGGATGGAGAAAGAGG 329236209 Query 89986 TAGAAATAATAGGAGGTAATGATATGTATCAATCAATGTGTAGA 90029 | || | || || || ||| | ||||| || ||||| || Sbjct 329236210 TCGAGGTGATCGGTGGCGCTGACAAATATCACTCTGTGTGTCGA 329236253 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 41720 TAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTT 41776 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 529233514 TAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 529233573 Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 || ||||| || || | || ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 529233574 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCTTCCAAAGAGATATTCTCC 529233633 Query 41837 ATGAAATCAAACGGATT 41853 || |||||||| ||||| Sbjct 529233634 ATAAAATCAAATGGATT 529233650 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 |||| ||| || |||| ||| || || || | ||||||||||||||| ||||| |||| Sbjct 529239608 TTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 529239667 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||| || || || || || || ||||| || | ||| || || |||||||||||| Sbjct 529239668 TTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCT 529239723 >seq3 Length=527952102 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| ||| || | ||| ||||| || |||||||| ||||| || || | ||||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 ||||||| ||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | ||| ||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| ||||| | ||||| || ||||| | ||||| ||||||||| |||||||| ||| | Sbjct 368183641 TACCTCTTCAGCAGTCCAGAAGGATGCCTGTGCCTGTTTATACATCTTCCAGATGTCAGG 368183700 Query 42622 ATATTGAATTGGGAAAATAACAAATC 42647 ||| |||||||||||||| ||||||| Sbjct 368183701 ATACTGAATTGGGAAAATGACAAATC 368183726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671097119572160