Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq2 113 5e-20 seq6 95.1 1e-14 >seq3 Length=527952102 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || |||||||| || |||||||| || || |||| ||||| Sbjct 475400579 ACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCT 475400520 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || ||||| ||| ||||||| | ||||| || || || |||||||||||||| Sbjct 475400519 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 475400460 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| || | | || | ||||| ||||||||||||||| || | |||||| Sbjct 475400459 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTG 475400400 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || ||||| || ||||| Sbjct 475400399 CCAGTCAAGGTCTTCACGAAGATCTGCAT 475400371 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || ||||||||||| |||||||| || | Sbjct 475401281 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 475401222 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || || || || ||| ||||||| | ||||| || ||||| Sbjct 475401221 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 475401162 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||| || | | || | ||||| ||||||||||| Sbjct 475401161 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 475401102 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| |||| || || || ||||| ||||| Sbjct 475401101 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 475401055 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || || | ||||| || || ||||| Sbjct 475400795 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTACCG 475400736 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || || || |||||||||||||| || ||| || Sbjct 475400735 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 475400676 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| ||||||||||||||| || | || || || ||||| || Sbjct 475400675 ACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAGGTC 475400616 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 475400615 TTCACAAAGATCTGCAT 475400599 >seq2 Length=541556283 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || ||||||||||| |||||||| || | Sbjct 204601968 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 204602027 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || || || |||||| ||||||| | ||||| || || || Sbjct 204602028 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 204602087 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||| || | | || | ||||| ||||||||||| Sbjct 204602088 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 204602147 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || || ||||| ||||| Sbjct 204602148 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 204602194 >seq6 Length=292091736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || ||||||||||| |||||||| || | Sbjct 193103657 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAC 193103598 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || || || || ||| ||||||| | ||||| || ||||| Sbjct 193103597 AGGGTACGACCATCTTCTAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 193103538 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||| || | | || | ||||| ||||||||||| Sbjct 193103537 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 193103478 Query 143138 TCAACAGTCACCGTCTTGCCGGTCA 143162 |||| || | |||||||| |||| Sbjct 193103477 TCAAGGGTGATGGTCTTGCCAGTCA 193103453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506982610197120