Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-24 >seq5 Length=304825324 Score = 127 bits (140), Expect = 3e-24 Identities = 323/488 (66%), Gaps = 4/488 (1%) Strand=Plus/Minus Query 70032 TTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGAT 70091 ||||||| || |||||||| |||| |||| || | | |||| ||||||| | | Sbjct 43288637 TTTTGGACAATCTGGGCTTCACT--CAGAGAAGAAGGAGGTTTGGGACCAGTGTGTGCCT 43288580 Query 70092 TCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGG 70151 |||||||||| || | || | | || ||| | ||||| ||||| || || | Sbjct 43288579 TCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAACACAGATTATTCTGGGCAAG 43288520 Query 70152 GTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGA 70211 | || | || | || | | |||| |||| |||| ||||| || || || |||| Sbjct 43288519 GAGTGGGTCTGCTACAAAAAGTCATCGACAAAATCAAAACCAACCCTGATGACAGAAGGA 43288460 Query 70212 TCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACT 70271 || | ||||| | |||| ||| |||| | | | ||||| | || | ||| ||| Sbjct 43288459 TCATTATGTGTGCTTGGAGTCCAAAAGATCTTCCTCTCATGGCCTTGCCTCTGTGCCACG 43288400 Query 70272 GTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGT 70330 | | |||||| ||| | | | |||| | || || || | || ||| | Sbjct 43288399 CTCTCTGTCAGTTCTACGTAGCAA-ATGGTGAGTTTTCCTGTCAGCTATAGCAGCGATCC 43288341 Query 70331 GCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATG 70390 | || |||||||| || || || || | |||||| || || || || | || ||||| Sbjct 43288340 GGAGATATGGGCCTTGGGGTGCCGTTCACCATTGCCAGTTACTCCCTGCTCACCTACATG 43288281 Query 70391 ATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCAC 70450 ||||||||||| || |||||||| | || || |||||| | | || || ||||| Sbjct 43288280 ATTGCTCACATCACAGGCCTGAAGCCAGGTGATTTTGTACACTCTCTGGGAGATGCTCAT 43288221 Query 70451 GTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTT 70510 || ||| ||||| || |||||| |||| | || || | || || || || |||||| Sbjct 43288220 GTATATGAGAATCATATTGAGCCACTAAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTT 43288161 Query 70511 CCCAAGCT 70518 |||||||| Sbjct 43288160 CCCAAGCT 43288153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741012735588160