Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 seq3 84.2 2e-11 >seq2 Length=541556283 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || || || |||||||| |||||||| |||||||| || Sbjct 204601968 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 204602027 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || ||||| | |||| | || ||||| || Sbjct 204602028 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 204602087 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || ||||| ||| ||| | || ||||| || || |||||| Sbjct 204602088 ATGCCTTCTTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTGTCACTGGGTTCTAC 204602146 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||||||| || || |||| || || ||||| || ||||| Sbjct 204602147 TTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 204602194 >seq3 Length=527952102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||||| ||||| || |||||||| || || | | | |||||| Sbjct 475400807 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCT 475400748 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | |||| | || ||||| || || ||||||||||| Sbjct 475400747 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 475400688 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || ||||| || || |||||| || | ||| |||||||| Sbjct 475400687 ATCTTTGC-CTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTT 475400629 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| |||| || || ||||| || ||||| Sbjct 475400628 ACCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || || || |||||||| |||||||| |||||||| || Sbjct 475401281 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 475401222 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || || || | |||| | || ||||| || Sbjct 475401221 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 475401162 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || ||||| ||| ||| | || ||||| || || |||||| Sbjct 475401161 ATGCCTTCTTTGTCCTGGATCTTTGC-CTTGACATTCTCAATGGTGTCACTGGGTTCTAC 475401103 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 475401102 TTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 475401055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157059080056