Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq2 89.7 4e-13 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || |||||||| || |||||||| || || || | ||||||| Sbjct 475401035 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 475400976 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || || || ||| | || || ||||| || || ||| | |||||||||||| Sbjct 475400975 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 475400916 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| || || | ||| | ||| | || ||| ||||| ||| ||||| ||| Sbjct 475400915 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 475400856 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || ||||| || ||||| Sbjct 475400855 CCAGTCAAGGTCTTCACAAAGATCTGCAT 475400827 >seq2 Length=541556283 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | || | || ||||| || || || ||||||||||| |||||||| || | Sbjct 204601968 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 204602027 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||||| || || || ||| | || || ||||| || || ||| Sbjct 204602028 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 204602087 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||||||| || ||| || || | ||| | || | ||||| | Sbjct 204602088 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 204602147 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||||||| ||||| ||||| || || ||||| || ||||| Sbjct 204602148 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 204602194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419561549585496