Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 315 6e-81 seq2 307 9e-79 seq1 111 1e-19 seq3 102 7e-17 >seq6 Length=292091736 Score = 315 bits (348), Expect = 6e-81 Identities = 595/863 (69%), Gaps = 27/863 (3%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | |||||||| | ||||| || || || ||||| ||||| | Sbjct 153786758 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCC 153786699 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| || || |||| |||||||||| || |||||| || || ||| || Sbjct 153786698 CTTCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATC----TTG 153786646 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | ||| ||| | | | |||||| || ||||| || || || || ||||||||| Sbjct 153786645 CTAAAAGCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAA 153786586 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || |||||||| || || |||||||||| |||||| || ||||| | | |||||| Sbjct 153786585 GTGCAATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATT 153786526 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || | || | || ||| | | | | |||| | || | | || || Sbjct 153786525 CTAACAGCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGT 153786466 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||| | || ||||||||||| || || || |||||||| || || | || ||| Sbjct 153786465 TTGAACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTT 153786406 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 ||||| |||| || ||||| | |||||||| || ||| ||||| | ||||| ||| Sbjct 153786405 GAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAA 153786346 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACT 13317 || ||||| || |||||||||||||||||||| ||| |||| | ||||||||| || Sbjct 153786345 CCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT-GCAACACGTTCACCATATGTTGC 153786287 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 | ||| | | ||||| | |||||||| ||||| | |||||| || | | Sbjct 153786286 TTCTTTGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGT 153786229 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || || || | | | | |||| ||| ||| ||||| || || || || Sbjct 153786228 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATAT--GTGTCAAT-AA 153786172 Query 13438 TAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 ||| ||||||||||| ||||| ||||| |||| || |||||||| ||||| || || | Sbjct 153786171 GAAGACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGC 153786112 Query 13497 TAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 || |||| |||||| ||||| | |||| ||| | || ||||| || ||||| Sbjct 153786111 GGGCTTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATG 153786053 Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA- 13614 || ||||| || ||||| || | | | ||| || || | || ||| || || Sbjct 153786052 CCATCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCG---TCAGAC 153785996 Query 13615 --CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 ||| || ||| | ||| ||| || || | ||| ||||||||| | ||||| || Sbjct 153785995 TTCAAAGTTTCCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAG 153785936 Query 13673 GAAGCAACAGCCTTCTTATACAT 13695 || || | || ||||||||||| Sbjct 153785935 GAGGCCTCTGCTTTCTTATACAT 153785913 >seq2 Length=541556283 Score = 307 bits (340), Expect = 9e-79 Identities = 526/750 (70%), Gaps = 26/750 (3%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | |||||||| | ||||| || || || ||||| ||||| | Sbjct 435771120 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCC 435771061 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| || || ||||| ||||||||||| || ||||||| || || ||| || Sbjct 435771060 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATC----TTG 435771005 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | |||| ||| | | | |||||| || ||||| || ||||| || ||||||||| Sbjct 435771004 CTAAAACCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAA 435770945 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || |||||||| || ||||||| | ||| || ||| || || || | | |||||| Sbjct 435770944 GTGCAATTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATT 435770885 Query 13079 TCAACTGCTT---CGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT-- 13132 ||| || |||||| | |||| | || || || || ||| || ||| Sbjct 435770884 CTAACAGCACTGACGATAATT-----TCTT-TCACTTTTTCCTCTGAAGGCTTGTGAACC 435770831 Query 13133 AGATGCTTAAACATCATACATGCAAAA-TCACAGTGCAATCCTTCATCTCTACTTATTAG 13191 || || || ||||| | || |||||| ||||| || || | |||||||| || || || Sbjct 435770830 AGGTGTTTGAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAG 435770771 Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC 13251 || |||||||| |||| || ||||| | |||||||| || | ||| ||||| | || Sbjct 435770770 TTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGC 435770711 Query 13252 AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCAT 13310 ||| ||||| ||||| || |||||||||||||||||||| |||| |||| | |||||||| Sbjct 435770710 AAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTA-CAACATGTTCACCAT 435770652 Query 13311 ACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGT 13370 | || | ||| | | ||||| | |||||||| ||||| | |||||| || Sbjct 435770651 ATGTTGCTTCTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAG 435770592 Query 13371 TCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTAT 13430 | |||| || || || || | | | | |||| ||| ||| ||||||||| | Sbjct 435770591 GTAGTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGT 435770532 Query 13431 CTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 | || || ||| |||||||||| ||||| || | ||||| | |||||||| ||||| Sbjct 435770531 CAAT-AAGAAGATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAG 435770473 Query 13490 AAACATC-TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 || || | || |||| ||||| ||||| | ||| | || | || ||||| || Sbjct 435770472 AAGCAGCGGGGCTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATT 435770413 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 | ||| || ||||| || ||||| ||||| Sbjct 435770412 TATTATGCCATCACTTGCTGCAAAGAAAGC 435770383 >seq1 Length=748055161 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || |||||||| |||| || ||||| | |||||||| || Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||||||||||||||| ||| Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 13295 ATCAACCTTTCACC 13308 | | | |||||| Sbjct 529237755 ACGACACGTTCACC 529237768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | |||||||| | ||||| || || || ||||| ||||||| Sbjct 529233554 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTC 529233613 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||| || || ||||| ||||||||||| || ||||||| Sbjct 529233614 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTT 529233652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATA 13462 |||| ||| ||| ||||||||| || || || ||| ||||||||||| ||||| || Sbjct 529239608 TTTCTTTAGGGTCCTTAATATAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATG 529239666 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||| || |||||||| ||||| || || | || |||| |||||| ||||| Sbjct 529239667 TTTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 529239722 >seq3 Length=527952102 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || |||| ||| || || || || || || || || || |||||||| |||| |||||| Sbjct 368168863 TCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTTTA 368168922 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| |||||||||||||| |||||||| || || || ||||| || || ||||| || Sbjct 368168923 AGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAGCA 368168982 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 368168983 ACCACTCTTTCTCC 368168996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||||||| || |||||||||||||| |||||||| ||||| | ||||||||||| Sbjct 368162255 TTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 368162314 Query 12922 CATAAAATCGAAAGGATT 12939 ||| ||||| || ||||| Sbjct 368162315 CATGAAATCAAAGGGATT 368162332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430956052968432