Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5 235 4e-57 seq3 187 2e-42 >seq5 Length=304825324 Score = 235 bits (260), Expect = 4e-57 Identities = 403/580 (69%), Gaps = 5/580 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||| || || || || | || |||||| | || || || || | |||| | | Sbjct 43288157 TGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCAT 43288216 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | || ||||| |||||||||| ||| ||||| || || || | || || || | || || Sbjct 43288217 ATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAG 43288276 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| || |||| ||||| ||| | || || ||||| | ||||| | Sbjct 43288277 CAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATAT 43288336 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTC-GCTCACGTAAAACTGACA 25625 | || || | ||| || |||||||| || | ||| | | ||| ||||| |||||||| Sbjct 43288337 CTCCG-GATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCT-ACGTAGAACTGACA 43288394 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACAC 25685 | | || |||| |||| | || || || | ||||| || |||| || |||| Sbjct 43288395 GAGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACAT 43288454 Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATC 25745 ||||| | ||||| || |||||| |||| || | ||||| ||| || | Sbjct 43288455 AATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACC 43288514 Query 25746 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCA 25805 ||| || ||| || || |||| |||| || |||| ||||| || |||| ||||| Sbjct 43288515 CACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCA 43288574 Query 25806 CTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATC 25865 |||||| | |||| ||||| | |||| ||||| ||| | |||||| || || Sbjct 43288575 CTGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAGTG--AAGCCCAGATTGTC 43288632 Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925 ||||| || | || |||||||| ||||||||| | | |||||| |||||||||| || Sbjct 43288633 CAAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTT 43288692 Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 |||||| | || || | ||||||||||| ||| || Sbjct 43288693 ACCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCC 43288732 >seq3 Length=527952102 Score = 187 bits (206), Expect = 2e-42 Identities = 350/507 (69%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || ||||| |||| | |||||| | || || | || | |||| || | Sbjct 37328957 TGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTAGGGACTCAATATGATTCACAT 37329016 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | || ||||| |||||||||| | ||||| || || || | || || || || || Sbjct 37329017 ATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAG 37329076 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 |||||||| ||||| || ||||| ||||| ||| | || || ||||||| ||||| | Sbjct 37329077 TGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATAT 37329136 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGT-CGCTCACGTAAAACTGACA 25625 | || || |||||| || ||||| || |||||| ||| | || ||||| ||| |||| Sbjct 37329137 CTCCA-GATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACT-ACGTAGAACGGACA 37329194 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACAC 25685 | | | ||| ||||| | || || || | ||||| || ||| | ||||||| Sbjct 37329195 GAGAGC-TGGCATGGAGGCAAGGCCATGAGAGGAAGATCTTTTGGATTCTAAGCGCACAT 37329253 Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATC 25745 ||||| | ||||| || |||||| |||| || | | |||| |||||||| Sbjct 37329254 AATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCAGTGAC--TTTGTAGCTGATC 37329311 Query 25746 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCA 25805 ||| || ||| || || |||| |||| || |||| ||||| || |||| ||||| Sbjct 37329312 CACTCCTTGCCCAGAATAATCTGTGTTCATCTCTCTGTATTCTGCCCCAAAATGTCTCCA 37329371 Query 25806 CTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATC 25865 |||||| || ||| || |||| | ||||| ||||| ||||| |||||| || || Sbjct 37329372 CTGGAAGCCATAC-CCTGTCCCAAATCTCCTTCTTCTCTGTGAGTGAAGCCCAAGTTGTC 37329430 Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTC 25892 |||||| || | | |||||||| || Sbjct 37329431 CAAAAACTCACACAACCCATTGGCATC 37329457 Score = 141 bits (156), Expect = 6e-29 Identities = 457/703 (65%), Gaps = 25/703 (4%) Strand=Plus/Plus Query 25271 TGCGCATCAGACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGA 25330 || || ||| |||||||| |||| | |||| ||||||| ||| || |||| Sbjct 405698301 TGGGCTTCACACTGCCATATCCATCTTAATGGTCCAGTGAGGGTTGTAGCCTTCCATCAG 405698360 Query 25331 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 25390 ||| ||||| ||||| ||||| || | | | ||| ||| | || | | |||| Sbjct 405698361 GAAGTCCTCAGCCTTGAAGTCATC-ATTTTTTACACTTTCCAGAGAATTTTGAACTTGGG 405698419 Query 25391 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGAC 25450 || ||| | || || || |||||| | | | || || | |||| || || || Sbjct 405698420 GAAAGGTTTTGGTTCTTGCTGAAGCTGAATTGTTATTGGCTCAATATGATTCACATATAC 405698479 Query 25451 GTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCAT 25510 ||| | |||||||||| ||| |||| || | | || || || | || || | Sbjct 405698480 ATGAACATCTCCCAGAGAGTGTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAA 405698539 Query 25511 CAT-GTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCC 25569 || ||| ||||| || |||| |||| |||||| || | ||||| | ||||| || | Sbjct 405698540 TATTGTAGGTGAGCAGGGAGTAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTC 405698599 Query 25570 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGT-CGCTCACGTAAAACTGACACAT 25628 | || | |||||| ||||| || || ||||| || | | || || || |||||||| | Sbjct 405698600 CA-GATCACTGGTATAGCTGCCAGGAAAGCTCATCATTCACT-ACATAGAACTGACAGAG 405698657 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 | | | | || || | ||| || | ||||| | ||||| ||||| || Sbjct 405698658 AGCATGGTATGGTGGCAAAGCCATGA--------TCTTTTGAATTCCAAATGCACATAAT 405698709 Query 25689 GA--------TGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGC 25740 || | | ||||| || ||||| |||| || | ||||| ||| Sbjct 405698710 GACAAAATGATCCTTCTGTCATCAAGGTTGGTTTTGATTTTGTCAATGACTTTTTGAAGC 405698769 Query 25741 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATAC 25800 |||||||| || || || || |||| | || || || | ||||| || |||| Sbjct 405698770 TGATCCACTCCTTGTCCAGAATAATCTGTGTTAATCTCTTTGAATTCTGCCCCAAAATGT 405698829 Query 25801 CTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTC 25860 ||||||||||| | ||||| |||| | ||| ||||| ||||| |||||| Sbjct 405698830 CTCCACTGGAAGTCATACACTGGTCTCAAATCT---TCTTCTCTGTGAGTGAAGCCCAGG 405698886 Query 25861 TTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 25920 || |||||||| | || |||||||| ||||||||||| ||||| || | |||||| Sbjct 405698887 TT-TCCAAAAATTAATGTGACCCATTGGCATCCCAGATCTTCACCCCTTTGGCAGAGAGC 405698945 Query 25921 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCG 25963 || || |||||| | || || | |||| |||||| |||| Sbjct 405698946 TCCTTACCATTTGTGCAACCCCTAATAAACCCCAGCAGTTCCG 405698988 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || |||| ||||| || |||| ||||||||||| || ||||| ||||| | | Sbjct 265123302 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 265123243 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 |||| ||||| || || | |||| || |||||||| || | || |||||||| | Sbjct 265123242 CTCCTTCTTCTCTCTGAGTGAGGCCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCAT 265123183 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925 |||||||||| |||||||| | |||||||| || Sbjct 265123182 CCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTT 265123149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340116806538168