Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 8e-11 >seq2 Length=541556283 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 10145 TACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAATGCCA 10204 |||||||| || |||||| |||| | |||||| |||||||||||||| |||| ||||| Sbjct 113142842 TACCTGGGCTGCCAGGCCTTGTCCCAGATGATCAAGTTTTACCTGGAGAAAGTGATGCCT 113142783 Query 10205 CAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGAATCTA 10264 ||||| || ||| |||| || ||||||| | ||| ||| |||| || || || Sbjct 113142782 CAGGCAGAGAATGAGGA---GGGCGTCAAAGAGAAAGTGGGCTCCTTGGGAGACAAATTA 113142726 Query 10265 AAGA 10268 ||| Sbjct 113142725 CAGA 113142722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547344879324160