Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2 152 7e-32 seq1 89.7 7e-13 >seq2 Length=541556283 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| || | || ||||| || || || || | |||| || |||||||||| Sbjct 82227231 GAACACTGAATGCAGTGAAGGGACATCCCTTCACATTATTGCAGATAAGTGACTGGATAG 82227290 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 || | |||| || |||| || || | ||| || || ||||| || |||||||| Sbjct 82227291 AGGCTGTTTTGATAATTTCAAAACCTACATTTCCACCAAAAGTGCTAGGCTTCCAGTACT 82227350 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | ||||||||||| ||| ||||||| ||||||||||| || || || || || || | Sbjct 82227351 CAGGGGAGCAGATTGGGTTACCCATGAGTCCTTTGAGGGAGAAGGGCGCTCCAAGTTCTA 82227410 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 | | |||| || ||||||||| ||||| || |||||||||| | | | || | Sbjct 82227411 CCAGGGTCTCTCCAAAGATGGCGCCCGGACGAGGTTTTTCCACCAGAAGAGCAGGATATA 82227470 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 |||||| ||| ||||| || || || | || || || ||||| ||||| || |||| Sbjct 82227471 ACTCCATAGCATCGATATCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTC 82227530 Query 8973 CTGT 8976 |||| Sbjct 82227531 CTGT 82227534 Score = 116 bits (128), Expect = 5e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 |||||||||||||| || ||||||||||| | ||||||| || ||| |||| Sbjct 82231167 CTTACCCCATGTCCTAGACCTTTAGTGAATTCTGGGCCTCTGTGATGGTCTGTCTTAAAG 82231226 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||||||||| | || || |||||||| | || ||||| |||||||| Sbjct 82231227 AACTGGTGAGTGAAATGTTGAGCGAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 82231286 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 ||| | || |||| | |||||| ||||||||||| Sbjct 82231287 GGAATAAACTTCCTTCTCAGAAGAAATTTTTCCACAA 82231323 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 || || |||| || || ||| |||||| ||||||||| |||| || | || ||||| Sbjct 82229426 GTTTGGAACAACTGCTCATCATCCCATTCAGGATGTTCTTGTTTAAGGATGTCACACACA 82229485 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||| ||||||| || | || |||||||||||||| | ||| || || | |||||| Sbjct 82229486 CGGTTATGTTCCCGAAGATATATTGTAGCGTACATCATCAAACCTGGAACTAAGCCAAAT 82229545 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | ||||| || ||||| | || || ||| || | | || || |||||||| | Sbjct 82229546 ACTTCTTGTCCAACAGCAAATTTCAGATGTTCAGGGATATGAGGTGGGTAGATCATTTCT 82229605 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||| |||||| || |||| ||||| | ||| || ||||| Sbjct 82229606 ACCTCAGTATCTTTCACTAAGGGAGGATATACTTCTCCATCAAT 82229649 >seq1 Length=748055161 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 |||| | || |||||||| | ||||||||| |||| ||||||||| | | |||| Sbjct 415952481 CAAAGGAGTCAGGCATGAGTGGATGCCAGTGGTACAGATGGTTAAACTCCAAGGAGATAC 415952422 Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 | ||||||||||| ||| | ||||| |||| |||||| | |||| || || ||| Sbjct 415952421 GGTTTTGGTACTGAAACTGGATTCCAAACAGCATTTCGGGGTCAAACTTCAGCTTCAAGA 415952362 Query 9560 GGTAGCCGCTGAGCTGCTGAACATACTGCGTC-ACGATAATGTTGATTGTTTCCCC 9614 ||||| || || ||||| ||||| | | || | || ||| |||| || ||||| Sbjct 415952361 AATAGCCACTAAGGTGCTGCACATA-TTCTTCAATGACAATCCTGATGGTCTCCCC 415952307 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | ||||||||| | |||||||| || || || || |||| ||||| Sbjct 415949610 TCACCTATGAGGATGAGTCGGGCTGTCTGAAAGAGCTGCTCATCTTTCCAGGTGGGATGC 415949551 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||| | || || || | |||||| |||| |||||||| ||||| |||||| Sbjct 415949550 TCAGCTCTCAAGATGTCACAGACACGGTTGTGCTCCCGAAGCCAGATTGTAGCATACATC 415949491 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772 ||||| || || | || ||||| ||||||| || || |||| Sbjct 415949490 ATGAGGCCTGGGAGCAACCCAAACACCTCTTGGCCCACGGCCA 415949448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708480375495040