Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 152 7e-32
seq1 89.7 7e-13
>seq2
Length=541556283
Score = 152 bits (168), Expect = 7e-32
Identities = 216/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| || | || ||||| || || || || | |||| || ||||||||||
Sbjct 82227231 GAACACTGAATGCAGTGAAGGGACATCCCTTCACATTATTGCAGATAAGTGACTGGATAG 82227290
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
|| | |||| || |||| || || | ||| || || ||||| || ||||||||
Sbjct 82227291 AGGCTGTTTTGATAATTTCAAAACCTACATTTCCACCAAAAGTGCTAGGCTTCCAGTACT 82227350
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852
| ||||||||||| ||| ||||||| ||||||||||| || || || || || || |
Sbjct 82227351 CAGGGGAGCAGATTGGGTTACCCATGAGTCCTTTGAGGGAGAAGGGCGCTCCAAGTTCTA 82227410
Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912
| | |||| || ||||||||| ||||| || |||||||||| | | | || |
Sbjct 82227411 CCAGGGTCTCTCCAAAGATGGCGCCCGGACGAGGTTTTTCCACCAGAAGAGCAGGATATA 82227470
Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972
|||||| ||| ||||| || || || | || || || ||||| ||||| || ||||
Sbjct 82227471 ACTCCATAGCATCGATATCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTC 82227530
Query 8973 CTGT 8976
||||
Sbjct 82227531 CTGT 82227534
Score = 116 bits (128), Expect = 5e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
|||||||||||||| || ||||||||||| | ||||||| || ||| ||||
Sbjct 82231167 CTTACCCCATGTCCTAGACCTTTAGTGAATTCTGGGCCTCTGTGATGGTCTGTCTTAAAG 82231226
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
|||||||| ||||||||||| | || || |||||||| | || ||||| ||||||||
Sbjct 82231227 AACTGGTGAGTGAAATGTTGAGCGAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 82231286
Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
||| | || |||| | |||||| |||||||||||
Sbjct 82231287 GGAATAAACTTCCTTCTCAGAAGAAATTTTTCCACAA 82231323
Score = 111 bits (122), Expect = 2e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
|| || |||| || || ||| |||||| ||||||||| |||| || | || |||||
Sbjct 82229426 GTTTGGAACAACTGCTCATCATCCCATTCAGGATGTTCTTGTTTAAGGATGTCACACACA 82229485
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| ||| ||||||| || | || |||||||||||||| | ||| || || | ||||||
Sbjct 82229486 CGGTTATGTTCCCGAAGATATATTGTAGCGTACATCATCAAACCTGGAACTAAGCCAAAT 82229545
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| ||||| || ||||| | || || ||| || | | || || |||||||| |
Sbjct 82229546 ACTTCTTGTCCAACAGCAAATTTCAGATGTTCAGGGATATGAGGTGGGTAGATCATTTCT 82229605
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
|||| |||||| || |||| ||||| | ||| || |||||
Sbjct 82229606 ACCTCAGTATCTTTCACTAAGGGAGGATATACTTCTCCATCAAT 82229649
>seq1
Length=748055161
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
|||| | || |||||||| | ||||||||| |||| ||||||||| | | ||||
Sbjct 415952481 CAAAGGAGTCAGGCATGAGTGGATGCCAGTGGTACAGATGGTTAAACTCCAAGGAGATAC 415952422
Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559
| ||||||||||| ||| | ||||| |||| |||||| | |||| || || |||
Sbjct 415952421 GGTTTTGGTACTGAAACTGGATTCCAAACAGCATTTCGGGGTCAAACTTCAGCTTCAAGA 415952362
Query 9560 GGTAGCCGCTGAGCTGCTGAACATACTGCGTC-ACGATAATGTTGATTGTTTCCCC 9614
||||| || || ||||| ||||| | | || | || ||| |||| || |||||
Sbjct 415952361 AATAGCCACTAAGGTGCTGCACATA-TTCTTCAATGACAATCCTGATGGTCTCCCC 415952307
Score = 87.8 bits (96), Expect = 3e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || || | ||||||||| | |||||||| || || || || |||| |||||
Sbjct 415949610 TCACCTATGAGGATGAGTCGGGCTGTCTGAAAGAGCTGCTCATCTTTCCAGGTGGGATGC 415949551
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| | ||| | || || || | |||||| |||| |||||||| ||||| ||||||
Sbjct 415949550 TCAGCTCTCAAGATGTCACAGACACGGTTGTGCTCCCGAAGCCAGATTGTAGCATACATC 415949491
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772
||||| || || | || ||||| ||||||| || || ||||
Sbjct 415949490 ATGAGGCCTGGGAGCAACCCAAACACCTCTTGGCCCACGGCCA 415949448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708480375495040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |