Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-38 >seq2 Length=541556283 Score = 170 bits (188), Expect = 3e-38 Identities = 205/276 (74%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | | || || ||||||||||| || |||||||||||||| || Sbjct 251298493 GCTAAGCGGCACCGGA-AGGTGTTGCGGGATAACATCCAGGGCATCACCAAGCCAGCCAT 251298551 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| |||||||| || |||||| ||||||| | | || ||||||| Sbjct 251298552 CCGGCGCCTGGCTCGGCGTGGTGGCGTTAAGCGTATCTCTGGGCTTATTTACGAAGAGAC 251298611 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | || | ||||| ||| ||| |||| |||||| || ||| || || Sbjct 251298612 CCGCGGTGTTCTCAAAGTGTTCCTGGAGAACGTGATCCGAGATGCTGTCACCTACACGGA 251298671 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| ||||| ||||||| | || || || | || || ||||| Sbjct 251298672 GCACGCTAAGAGGAAGACCGTCACTGCCATGGACGTTGTATACGCTCTTAAGCGCCAAGG 251298731 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 ||| | | || || ||||| ||||||| |||| Sbjct 251298732 CCGAACTCTGTACGGCTTTGGGGGTTAATCCGCTAA 251298767 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| | | || ||||||||||||||||| || ||||||||||| || | Sbjct 258189937 CGCCAAGCGTCATCGGAAGGTC-CTTCGAGATAACATCCAGGGGATCACCAAGCCCGCCA 258189879 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||| || ||||| || || || | || ||| | |||| || |||| Sbjct 258189878 TCCGCCGTTTGGCTCGGCGCGGTGGTGTGAAACGAATTTCAGGACTCATCTACGAGGAGA 258189819 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||| | ||||| ||| ||| |||| || || || || || | Sbjct 258189818 CTCGCGGAGTCCTGAAAGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACTTACACGG 258189759 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| |||||||| | ||||| || | ||||| || | Sbjct 258189758 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTCAAACGCCAGG 258189699 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || |||||||| Sbjct 258189698 GCCGCACTCTGTACGGTTTTGG 258189677 Score = 159 bits (176), Expect = 5e-35 Identities = 202/275 (73%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || | | | || || || ||||||||||| ||||||||||| || || || Sbjct 494709463 GCTAAGCGGCACAGGAAGGTC-CTCCGCGATAACATCCAGGGAATCACCAAACCTGCCAT 494709521 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| || ||||| ||||||||| |||| || | ||||||| |||| Sbjct 494709522 TCGTCGCCTGGCTCGGCGCGGTGGCGTCAAGCGTATCTCGGGGCTCATCTATGAGGAGAC 494709581 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| | | ||| |||| || || || ||| || || Sbjct 494709582 CCGCGGCGTGCTGAAGGTCTTCCTGGAAAACGTGATCCGGGACGCCGTCACCTACACGGA 494709641 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||||||| |||||||| | ||||| || | || || || || Sbjct 494709642 GCACGCTAAGAGGAAGACTGTCACCGCCATGGATGTAGTCTACGCTCTCAAGCGCCAGGG 494709701 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 | | | |||| || || || | ||| ||||| Sbjct 494709702 CAGAACCCTTTACGGATTCGGCGGCTAAATTTCTA 494709736 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | ||| |||||||||||||| || |||||||| || |||||| Sbjct 494848223 GCTAAGCGCCACCGGAAAGTTCTCCGAGATAACATCCAGGGCATCACCAAACCTGCTATC 494848282 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| ||||||||| |||| || | | ||||| |||| Sbjct 494848283 CGCCGTCTCGCTCGGCGTGGTGGTGTCAAGCGTATCTCGGGGCTCATTTATGAGGAGACC 494848342 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | || ||||||| ||| ||| |||| || || || ||| || ||| Sbjct 494848343 CGCGGCGTGCTCAAAGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAG 494848402 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 494848403 CACGCCAAGAGGAAGACAGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 494848462 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | || ||||||||||||||||| || ||||||||||| || | Sbjct 258209092 CGCCAAGCGGCATCGGAAGGTC-CTTCGAGATAACATCCAGGGGATCACCAAGCCCGCCA 258209034 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||| || || || || |||||| | || || | |||| || |||| Sbjct 258209033 TCCGCCGTTTGGCTCGGCGCGGCGGCGTGAAGCGTATTTCAGGGCTCATCTACGAGGAGA 258208974 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||| | ||||| ||| ||| |||| || || || || || | Sbjct 258208973 CTCGCGGAGTCCTGAAAGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACTTACACGG 258208914 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | ||||| || | ||||| || | Sbjct 258208913 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTGGTCTACGCTCTCAAACGCCAGG 258208854 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || |||||||| Sbjct 258208853 GCCGCACTCTGTACGGTTTTGG 258208832 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || || |||||||| ||||| || ||||||||||| |||||| Sbjct 494856564 CTTCGGGATAACATTCAGGGCATTACCAAGCCTGCTATTCGCCGTCTGGCTCGCCGTGGT 494856623 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| ||| | | ||||| |||| |||| || ||||| | ||| Sbjct 494856624 GGTGTCAAGCGTATCTCGGGACTCATTTATGAGGAGACCCGTGGCGTACTGAAGGTTTTC 494856683 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || | ||||| ||| Sbjct 494856684 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAGCACGCCAAGAGAAAGACCGTC 494856743 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || || || | || || || ||| | | |||| || || || Sbjct 494856744 ACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGGCAGAACCCTTTACGGATTCGGC 494856803 Query 16694 AGTTAA 16699 ||||| Sbjct 494856804 GGTTAA 494856809 Score = 149 bits (164), Expect = 1e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | || || ||||| ||||| || ||||||||||| || || Sbjct 494732379 GCCAAGCGGCATAGAAAAGTGCTCCGCGATAATATCCAGGGTATCACCAAGCCTGCCATT 494732320 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 494732319 CGCCGTCTGGCTCGGCGCGGCGGCGTCAAGCGTATCTCAGGGCTCATCTACGAGGAGACC 494732260 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 494732259 CGCGGTGTGCTGAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAG 494732200 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| | ||||| || | |||||||| ||| Sbjct 494732199 CACGCCAAGAGGAAGACAGTCACCGCCATGGACGTGGTCTACGCGCTCAAACGTCAGGGC 494732140 Score = 145 bits (160), Expect = 1e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||| ||||| ||||| || ||||||||||| || || Sbjct 494698116 TCTTCGGGACAACATCCAGGGCATCACTAAGCCTGCTATTCGCCGTCTGGCTCGGCGCGG 494698175 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| |||| || | |||| || |||| || | || ||||| | || Sbjct 494698176 CGGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTTTT 494698235 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| || || || ||| || || |||||||| | |||||||| Sbjct 494698236 CCTGGAGAACGTAATCCGGGACGCCGTCACCTACACAGAACACGCTAAGAGGAAGACTGT 494698295 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||| |||||||| | ||||| || | || || || ||| Sbjct 494698296 CACCGCCATGGATGTGGTCTACGCCCTCAAGCGCCAGGGC 494698335 Score = 127 bits (140), Expect = 3e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| ||||| || |||||||||||||| || |||||| ||||||| || || Sbjct 494921483 CTCCGGGATAATATCCAGGGCATCACCAAGCCAGCCATTCGTCGTTTGGCTCGGCGCGGC 494921542 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | | ||||| |||| || | || | || ||||| Sbjct 494921543 GGCGTCAAGCGTATCTCGGGGCTCATTTATGAGGAGACCCGCGGCGTGCTCAAAGTCTTC 494921602 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || | ||||| ||| Sbjct 494921603 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAGCACGCCAAGAGGAAGACAGTC 494921662 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| | ||||| || Sbjct 494921663 ACCGCCATGGACGTGGTCTACGC 494921685 Score = 114 bits (126), Expect = 2e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || || ||||| ||||| |||||||| ||||| ||||| || || || Sbjct 251460940 CGGGATAACATTCAGGGCATCACTAAGCCTGCTATCCGGCGTCTTGCTCGGCGCGGCGGC 251460881 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| ||| | | ||||| |||| |||| || | ||| | ||| | Sbjct 251460880 GTCAAGCGGATCTCGGGACTTATTTATGAGGAGACCCGTGGGGTACTCAAGGTATTCTTG 251460821 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || |||| ||||| | ||||| || || || || | |||||||| || Sbjct 251460820 GAGAATGTCATCCGGGATGCCGTGACTTATACTGAACATGCCAAGAGGAAGACTGTGACT 251460761 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || || || | || ||||| ||||| | | ||||||||||| Sbjct 251460760 GCTATGGACGTGGTGTACGCGCTTAAGCGTCAGGGCCGCACTCTCTATGGTTTTGG 251460705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070613836088