Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 8e-13 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| |||||||| || ||| |||||||| | | ||||||||||| || || Sbjct 6184986 TGGCATTCTTTTCAATCATGAGAGTCCCAGAAGAGGGGCTAATTTTGTAACTCGAAAAAT 6184927 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 | || | || ||| ||| ||||| | | || | | | | || |||| Sbjct 6184926 CAGCCAGTCTGTAGCTAGGATTCACCTTGGACAATTGGAGTGTTTCAGTTTGGGGAATCC 6184867 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 |||| ||| | |||||||| || || |||||||||||||| || ||||| ||||||| Sbjct 6184866 GGATGCCAAGCGAGATTGGGGCCATGCCAAGGATTATGTTGAGGCTCTGTGGCTAATGTT 6184807 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTG 194157 ||| ||||| || || || | ||| |||| Sbjct 6184806 GCAGACTGATGAGCCAGAAGACTTTGTCATTG 6184775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807504566288960