Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6 286 4e-72 seq2 257 2e-63 seq3 100 3e-16 seq1 95.1 1e-14 >seq6 Length=292091736 Score = 286 bits (316), Expect = 4e-72 Identities = 510/740 (69%), Gaps = 21/740 (3%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || ||||| || || || || | Sbjct 153786758 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCC 153786699 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 ||||||| || ||| ||||||||||||||| ||||||| | | |||| || || || Sbjct 153786698 CTTCCAAAGAGATA---TCCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAA 153786642 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 || | ||||| | | | ||| |||||||||||||| |||||||| |||||| | Sbjct 153786641 AAGCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGC 153786582 Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407 ||||||| || ||||| |||||||| | ||||| |||||||| | |||||| | Sbjct 153786581 AATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAA 153786522 Query 21408 CGGCTTCAACAATTATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATT 21461 | || | || || || | | | | |||| || | || | | ||| | | Sbjct 153786521 CAGCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGG-CTTGTG---TACCAGG--T 153786468 Query 21462 GTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCAT 21521 |||| ||||| || || |||||||||||||| ||||| ||||| || || || ||||||| Sbjct 153786467 GTTTGAACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCAT 153786408 Query 21522 TAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG 21581 | ||||| ||||| || |||||||| |||| || || ||| ||||| || ||||| | Sbjct 153786407 TTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAG 153786348 Query 21582 CTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG 21641 || |||||||| || || ||||| || ||||| || | | |||||||| ||||| | Sbjct 153786347 AACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTG 153786288 Query 21642 ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTG 21701 |||||| ||| ||||| | ||||| | || || | ||||| |||| | || Sbjct 153786287 CTTCTTTGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTG 153786230 Query 21702 TATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | ||||| || || || ||| | |||| | || | || Sbjct 153786229 TTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAAT--ATGTGTCAATAA 153786172 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 ||||||||||||||||||| ||||| | || || || || || || || || || | Sbjct 153786171 GAAGACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGC 153786112 Query 21822 TTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATT 21880 || |||| || || || | |||| || | |||| |||||||||||||| Sbjct 153786111 GGGCTTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATG 153786053 Query 21881 CCATCACTGGCGGCAAAAAA 21900 |||||||| || ||||| || Sbjct 153786052 CCATCACTTGCTGCAAAGAA 153786033 >seq2 Length=541556283 Score = 257 bits (284), Expect = 2e-63 Identities = 393/557 (71%), Gaps = 5/557 (1%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || ||||| || || || || | Sbjct 435771120 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCC 435771061 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 ||||||| || ||| ||||||||||||||||||||||| | | |||| || || || Sbjct 435771060 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAA 435771001 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 |||| ||||| | | | ||| |||||||||||||| || ||||| |||||| | Sbjct 435771000 AACCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGC 435770941 Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407 ||||||| || |||||||||| | | | || || ||||| || | |||||| | Sbjct 435770940 AATTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAA 435770881 Query 21408 CGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTT 21465 | || || || || | | | | || | || ||| | | | ||||| Sbjct 435770880 CAGCACTGACGATAATTTCTTTCA--CTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTT 435770823 Query 21466 AAACATCAAACATGCAAAA-TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 ||||| || || |||||| |||||||| ||| | ||||| || || || | |||||| | Sbjct 435770822 GAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTG 435770763 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 |||| ||||| || |||||||| |||| || || | ||| ||||| || ||||| | | Sbjct 435770762 AAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAAC 435770703 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | |||||||| || || ||||| || ||||| || || | ||||||| ||||| | || Sbjct 435770702 CAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTT 435770643 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 |||| ||| |||||| | ||||| | || || | ||||| |||| | ||| | Sbjct 435770642 CTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTT 435770583 Query 21705 CAATAGCTTTTAAAAGA 21721 |||| || || || ||| Sbjct 435770582 CAATGGCATTGAAGAGA 435770566 >seq3 Length=527952102 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| || | ||| ||||| ||| | ||| | ||||| | | | Sbjct 368162195 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCAGCCATAACTGCAAAGCG 368162254 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| || || |||||||| ||||||||||| || ||||||| || ||| ||| Sbjct 368162255 TTGATATTCGGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 368162314 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||| |||||||| ||||| ||||| | ||| Sbjct 368162315 CATGAAATCAAAGGGATTATCAGACTGAAA 368162344 >seq1 Length=748055161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || ||||| || || || |||| Sbjct 529233554 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTC 529233613 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 ||||||| || ||| ||||||||||||||||||||||| Sbjct 529233614 CTTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTC 529233653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531867449819840