Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 372 4e-98 seq6 363 2e-95 seq3 120 4e-22 seq1 114 2e-20 seq4 107 2e-18 >seq2 Length=541556283 Score = 372 bits (412), Expect = 4e-98 Identities = 657/948 (69%), Gaps = 12/948 (1%) Strand=Plus/Minus Query 32959 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTT 33015 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 435771160 TAGAAGTCTCCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 435771101 Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 || ||||| || || | || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 435771100 TGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCC 435771041 Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 33135 || |||||||| ||||| | || |||| || |||| || | ||| | || | | Sbjct 435771040 ATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGTTCCAACATAAGT 435770981 Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTT 33194 || || || || ||||| || ||| ||||| | ||||||||||| || || ||| Sbjct 435770980 CTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTTT 435770921 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT-ATAATAG 33253 | || || || |||| | || || ||||| || || ||| ||| ||||| Sbjct 435770920 ATATGCAA-AGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGATAATTT 435770863 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA- 33312 | | || |||| || || || | | ||||| ||||| || || || ||| Sbjct 435770862 CTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGCAAAAA 435770803 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || | | |||| ||||| ||||| ||||| || ||||| || | ||| |||||| Sbjct 435770802 TCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATT 435770743 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | || || || || ||||| |||||||| || || || |||||||||||||||||||| Sbjct 435770742 AAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCA 435770683 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTT 33489 ||||| ||||| || | || || ||||| || |||| ||||| | Sbjct 435770682 ACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATCCATCAT 435770623 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 ||||| || || |||||||| |||||||| | ||||| |||||||| |||||| | Sbjct 435770622 AAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAAT 435770563 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | |||| ||| || |||| |||||| || || | |||| |||||||||| ||||| Sbjct 435770562 TCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGAATGT 435770503 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGTACTTC 33668 ||| | || || | || || || || ||||| || | | || | || | || |||||| Sbjct 435770502 ATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTATACTTC 435770443 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | ||| || ||| ||||||||||||| | ||| || ||||| |||||||| || || Sbjct 435770442 TTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAGC 435770383 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || ||||| ||| || || || || || | | | | ||| | | ||||| Sbjct 435770382 TAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCCCAGTGCTGCATATC 435770323 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||||| | ||| || || || ||||||| || || |||| || || |||||||||| Sbjct 435770322 CTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTATACATGTG 435770263 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||||| || | || ||||| || ||||| | || ||||| Sbjct 435770262 CCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCGCTTGGGATT 435770215 >seq6 Length=292091736 Score = 363 bits (402), Expect = 2e-95 Identities = 642/932 (69%), Gaps = 13/932 (1%) Strand=Plus/Minus Query 32959 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTT 33015 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 153786798 TAGAAGTCTGCATCCAAGGTAAAAGAATTTTCAGTTGGACTTGACATCACTCCCATTCTC 153786739 Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 || ||||| || || | || ||||| || |||||||| |||||||| || |||| || Sbjct 153786738 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATAT---CC 153786682 Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 33135 || |||||||| |||| | || |||| || |||| | | ||| | || | | Sbjct 153786681 ATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCAACATAAGT 153786622 Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195 || || || || ||||| |||||| ||||| | ||||||||||| || | || Sbjct 153786621 CTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTT 153786562 Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255 || || | ||| |||| | ||| || ||||| || || |||| || || | Sbjct 153786561 ACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGATCATTTCT 153786502 Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 | || |||| || || || | | ||||| ||||| || || || ||||| Sbjct 153786501 TTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAGCAGGCAAAATCA 153786442 Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 || || | |||||| ||||| ||||| | ||| || ||||| || | ||| ||||||| Sbjct 153786441 CAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTAAA 153786382 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || || || || |||| |||||||| || || || |||||||||||||||||||| ||| Sbjct 153786381 CCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACT 153786322 Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGA 33492 || ||||| || || | || ||||| || |||| ||||| | Sbjct 153786321 GCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATCCA--TCAAG 153786264 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| || || |||||||| |||||||| | ||||| |||||||| |||||| | | Sbjct 153786263 GCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAATTCC 153786204 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 |||| ||| || |||| || || || || | ||||||||||||||| ||||| | Sbjct 153786203 CTTTCTTTAGGGTCCTTAATAT--GTGTCAATAAGAAGACTATACATTTCAGAATGTCTA 153786146 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||| | || || || || || || ||||| || | || || || | |||||||||| Sbjct 153786145 TTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCTTGG 153786086 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | ||| || | | | |||||||||| ||||| || ||||| |||||||| ||| | || Sbjct 153786085 CTAAACCGCTTCAACCAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAACCCTAAC 153786026 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 || || ||| || || || ||||| | | | | | ||| | | ||||| ||| Sbjct 153786025 ACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCAGTGCTGAATATCCTTA 153785966 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | ||| || || || ||||||| || || |||||||| || |||||||||| || Sbjct 153785965 GAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGTCAA 153785906 Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||||| || | || ||||| || ||||| Sbjct 153785905 ATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq3 Length=527952102 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| ||| || ||||| ||||| || |||||||| ||||| || || | ||||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 ||||||| ||||| | ||| || || || || ||||| || ||||| || |||||||| | Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | ||| ||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| | ||||| || ||||||| ||||| ||||||||| |||||||||||| Sbjct 368183641 TACCTCTTCAGCAGTCCAGAAGGATGCCTGTGCCTGTTTATACATCTTCCAGATGTCAGG 368183700 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 ||| || ||||||||||| ||||||| Sbjct 368183701 ATACTGAATTGGGAAAATGACAAATC 368183726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750 |||||||| |||||||| ||||||||||||||||| ||||| | ||| || ||||| Sbjct 368175366 TTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATATGAGAGATGAAATAC 368175425 Query 33751 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 || || |||| | | ||||| ||||||| | | ||| || |||| ||| || Sbjct 368175426 TTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCCTTTGATAAATCAAC 368175478 >seq1 Length=748055161 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| || ||||| || | ||| ||||||| || || || | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| |||||||| || || || |||||||||||||||||||| ||||| ||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 33446 C 33446 | Sbjct 529237753 C 529237753 Score = 104 bits (114), Expect = 3e-17 Identities = 192/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 80955 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 81014 || || ||||| ||||| |||||||| || ||||||||||| |||||| ||||| ||| Sbjct 329235972 GTCATTGGTATTGATGAGGGACAGTTTTTCCCAGACATTGTAGAATTCAGTGAGACCATG 329236031 Query 81015 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 81074 ||||| | || || | | | || ||||| ||||| |||||||| ||||| | || | Sbjct 329236032 GCAAATGCTGGGAAGACAATAATTGTAGCTGCACTAGATGGGACCTTTCAGAGGAAGGCA 329236091 Query 81075 TTTAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTG 81134 || ||||| | || | || ||| | | || | |||| ||||| | || ||| Sbjct 329236092 TTGGGGAATATCCTAAACTTGATGCCACTGACAGAGAGTATGGTGAAACTGATAGCAGTG 329236151 Query 81135 TGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTGGGTGAGGAAACCGAGATA 81194 || ||| | ||||| ||| ||| | | | | || || |||| ||| | ||| | Sbjct 329236152 TGCATGGAGTGCTTCCGGGAAGCTGCTTATACCAAGAGACTGGGGATGGAGAAAGAGGTC 329236211 Query 81195 GAAATAATAGGAGGTAATGATATGTATCAATCGGTGTGTAGA 81236 || | || || || ||| | ||||| || |||||| || Sbjct 329236212 GAGGTGATCGGTGGCGCTGACAAATATCACTCTGTGTGTCGA 329236253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 32959 TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTT 33015 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 529233514 TAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 529233573 Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 || ||||| || || | || ||||| || ||||||||||||||||| || ||||| ||| Sbjct 529233574 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCTTCCAAAGAGATATTCTCC 529233633 Query 33076 ATGAAATCAAACGGATT 33092 || |||||||| ||||| Sbjct 529233634 ATAAAATCAAATGGATT 529233650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 |||| ||| || |||| |||||| || || | ||||||||||||||| ||||| |||| Sbjct 529239608 TTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 529239667 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 |||| || || || || || || ||||| || | || || || | |||||||||| | Sbjct 529239668 TTTCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCTTGGC 529239727 Query 33674 AAAATCGTTCCGCC 33687 ||| || ||| || Sbjct 529239728 TAAACCGCTCCACC 529239741 >seq4 Length=435153693 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||| || || | ||| || || || || ||||| |||| | Sbjct 349039782 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 349039723 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| || || | || || | || || ||| |||| || |||| ||||| | Sbjct 349039722 TGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGTCTA 349039663 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 |||| || || || || ||| | |||| |||||| ||||| ||||| | |||| Sbjct 349039662 ATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663 |||| | || || |||||||| | ||| || || || || ||||||||| | || || | Sbjct 349043620 GACGGTTGGTGCCTGCATTAAAAAGGGTGGGGGAGGCATGAGTAAACCATCTCTCTGAGA 349043561 Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63723 | || || || || |||||||| | || || || || ||||| || || | || | Sbjct 349043560 GAAGGTTATAGGTTTCAATAGCAGCATCAATGTCATCTTTGTGAATCCCCACAGACACTC 349043501 Query 63724 GCATTAACATGTGCTGAGGTCTTTCA 63749 ||||| |||||||||||||| |||| Sbjct 349043500 TCATTAGCATGTGCTGAGGTCGTTCA 349043475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 || || ||| ||||||||||||||||| || ||||| || || | || || || || | Sbjct 349049296 ATTCTCCACACGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAGAAAAGGTCCCTAGC 349049237 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 || || || || ||||| || ||||| || | ||| ||||| | | | || |||| Sbjct 349049236 TCGCTGCTCTTCCTTTCCAGTGTTCTTCTTCAAATCAAGGAATTCAAAGACGTCTAAATG 349049177 Query 63329 CCACGGTTCCAAGTATATGGC 63349 ||| ||||||||||| || || Sbjct 349049176 CCATGGTTCCAAGTAGATAGC 349049156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622908141210560