Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq6 111 2e-19 seq2 104 2e-17 >seq3 Length=527952102 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | |||||| | ||| ||||| | | Sbjct 475401055 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGT 475401114 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || ||||| || || Sbjct 475401115 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAG 475401174 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475401175 CAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401234 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| || | || |||||||| | | || ||||| Sbjct 475401235 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 475401281 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | |||||| | ||| ||||| | | Sbjct 475400599 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTAGAACCCAGT 475400658 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 475400659 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400718 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475400719 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAAC 475400778 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || | || ||||||| Sbjct 475400779 ATCCAGAAAGAATCCACCTTGCACTTGGTCCT 475400810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | || ||| | ||| ||||| | | Sbjct 475400371 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 475400430 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 475400431 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400490 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475400491 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 475400550 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| | || | ||||| Sbjct 475400551 ATCCAGAAAGAATCAACTCTTCACTTAGTCCT 475400582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | |||||| | ||| | || | | Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401006 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || | || ||||||| | || ||||| || Sbjct 475401007 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 475401053 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | |||||| | ||| | || | | Sbjct 475399915 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 475399974 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 475399975 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400034 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475400035 CAGAGACTGATCTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAAC 475400094 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || | || ||||||| Sbjct 475400095 ATCCAGAAAGAATCCACCCTGCACTTGGTCCT 475400126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | || ||| | ||| | || | | Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400262 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 475400263 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475400322 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || | || ||||||| | || ||||| || Sbjct 475400323 ATCCAGAAAGAATCCACCTTGCACTTGGTCCTTCGTCTCAGAGGTGG 475400369 >seq6 Length=292091736 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26780 TGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGA 26839 ||| || || | ||||| || | |||||| | ||| ||||| | | |||||||| || Sbjct 193103442 TGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGTGACACCATTGA 193103501 Query 26840 GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCAT 26899 | | ||||| |||||| ||||||||||| || ||||| || || || ||||| || Sbjct 193103502 GAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAGCAGAGACTGAT 193103561 Query 26900 TTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGA 26959 | | ||| || || || ||||||| | | | | | ||||| |||||||||||||| Sbjct 193103562 CTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAACATTCAAAAAGA 193103621 Query 26960 ATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || | || |||||||| | | || ||||| Sbjct 193103622 ATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 193103657 >seq2 Length=541556283 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | || ||| | ||| ||||| | | Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || || || || || Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || || || || ||||||| | | | | | ||||| ||| Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| || | || |||||||| | | || ||||| Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 204601968 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 |||||| | ||| ||||| | | |||||||| ||| | ||||| |||||| ||| Sbjct 230791123 ATCACCCTTGAAGTAGAACCCAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGAC 230791064 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 |||||||| || ||| | || || || ||||| || | | ||| || || || |||||| Sbjct 230791063 AAAGAAGGCATCCCTGCAGACCAGCAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGAT 230791004 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 | | | | | | |||| ||||| ||||||||||||| | || |||||||| | Sbjct 230791003 GGTCGTACCCTGTCTAACTACAACATCCAAAAAGAATCTATCCTGCACTTGGTCCTGCGC 230790944 Query 26985 CTTAGAGGAGG 26995 |||| ||||| Sbjct 230790943 TTTAGGGGAGG 230790933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478632387867520