Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 3e-15 seq2 87.8 5e-12 >seq6 Length=292091736 Score = 98.7 bits (108), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGG 22489 |||| || || || || ||||| ||| ||||| | |||| ||| ||| | | Sbjct 153786242 TTAAAAAGAAAGCTGACTGGGCCTTGA--TGGATTGGGGACAAAGAAGCAACATATGGTG 153786299 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 ||||| || || ||||| | |||||||| || ||||||||||| | ||| | | Sbjct 153786300 AACGTGTTGCAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCA 153786359 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | || |||| || ||||| | | ||||| || |||| ||||||||||| || |||| Sbjct 153786360 TATTCTGGCCCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAATTTATTA 153786419 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||||||||||| | ||| |||||||| || Sbjct 153786420 GCAGAGATGAGGGTTTACATTGTGATTTTGCCTG 153786453 >seq2 Length=541556283 Score = 87.8 bits (96), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGG 22489 |||| || || || || ||||| | |||||| | |||| ||| ||| | | Sbjct 435770598 TTAAAAAGAAAGCTGACTGGGCCTTATGATGGATTGGGGACAAAGAAGCAACATATGGTG 435770657 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 ||| | || | || ||||| | |||||||| || ||||||||||| | ||| | | Sbjct 435770658 AACATGTTGTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCA 435770717 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | || ||||| || ||||| | | ||||| || |||| ||||||||||| | |||| Sbjct 435770718 TATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAACTTATTA 435770777 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTT 22638 || ||||||||| | | ||| |||||| Sbjct 435770778 GCAGAGATGAGGATTTACATTGTGATTTT 435770806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303269836722512