Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq2 113 4e-20 seq6 111 1e-19 seq9 93.3 4e-14 >seq3 Length=527952102 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | ||||| || ||| Sbjct 475401055 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGT 475401114 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| ||||| || || Sbjct 475401115 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAG 475401174 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475401175 CAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 || ||||||||||| || | || || || | | ||||| ||||| | |||| Sbjct 475401235 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTGTCTAAT 475401289 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | |||||| | ||||| || ||| Sbjct 475400371 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 475400430 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 475400431 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400490 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475400491 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 475400550 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || |||||||| || |||| ||||| Sbjct 475400551 ATCCAGAAAGAATCAACTCTTCACTTAGT 475400579 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | || ||| | ||||| || ||| Sbjct 475400599 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTAGAACCCAGT 475400658 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 475400659 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400718 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475400719 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAAC 475400778 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 475400779 ATCCAGAAAGAATCCAC 475400795 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | ||||| ||| ||| Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400262 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475400263 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475400322 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 475400323 ATCCAGAAAGAATCCAC 475400339 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401006 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 475401007 ATCCAGAAAGAATCCAC 475401023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | ||||| ||| ||| Sbjct 475399915 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 475399974 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 475399975 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400034 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 475400035 CAGAGACTGATCTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAAC 475400094 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 475400095 ATCCAGAAAGAATCCAC 475400111 >seq2 Length=541556283 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | |||||| | ||||| || ||| Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || ||||| || ||||||| | | | | || || ||| Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 || ||||||||||| || | || || || | | ||||| ||||| | |||| Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTGTCTAAT 204601960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| | ||||| || ||| |||||||| ||| | ||||| |||||| ||| Sbjct 230791123 ATCACCCTTGAAGTAGAACCCAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGAC 230791064 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 ||||||||||| ||| | || || ||||||||||| | | ||| ||||| || |||||| Sbjct 230791063 AAAGAAGGCATCCCTGCAGACCAGCAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGAT 230791004 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTA 24186 | | | | | | || ||||| ||||||||||||| Sbjct 230791003 GGTCGTACCCTGTCTAACTACAACATCCAAAAAGAATCTA 230790964 >seq6 Length=292091736 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 24002 TGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGA 24061 ||| || || | ||||| || | || ||| | ||||| || ||| |||||||| || Sbjct 193103442 TGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGTGACACCATTGA 193103501 Query 24062 GCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGAT 24121 | | ||||| |||||| |||||||||||||| ||||| || || ||||||||||| Sbjct 193103502 GAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAGCAGAGACTGAT 193103561 Query 24122 TTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 | | ||| ||||| || ||||||| | | | | || || |||||||||||||| Sbjct 193103562 CTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAACATTCAAAAAGA 193103621 Query 24182 ATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 ||| || | || || || | | ||||| ||||| | |||| Sbjct 193103622 ATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGTGTCTAAT 193103665 >seq9 Length=79335909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || || || |||| || | || ||| | ||||| ||| ||| || ||||| Sbjct 56184995 TTTGTGAAGACCTTGACTGACAAGACTATCACCTTGGAAGTGGAGCCCAGTGATACCATT 56184936 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 ||| | ||||| |||||| |||||||||||||| ||||| || || ||||||||| Sbjct 56184935 GAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAGCAGAGACTG 56184876 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || ||| | || ||| ||| | | | | || || ||||| |||||| Sbjct 56184875 ATCTTTGCTGGTAAGTAGCTAGAATATGGTTGCATCCTGTCTGACTACAACATCCAAAAA 56184816 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 ||||| || | || || || | | |||| ||||| | |||| Sbjct 56184815 GAATCCACCCTGCACTTGGTCCTGTGCTTGATGGGAGGTGTCTAAT 56184770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429909716937480