Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 306 4e-78 seq2 288 1e-72 seq1 89.7 6e-13 seq3 84.2 2e-11 >seq6 Length=292091736 Score = 306 bits (338), Expect = 4e-78 Identities = 652/947 (69%), Gaps = 30/947 (3%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 ||||| |||||||| | ||||| ||| ||| |||| | | | ||| || || ||| Sbjct 153786798 TAGAAGTCTGCATCCAAGGTAAAAGAATTTTCAGTTGGACT-TGA--CATCACTCC-CAT 153786743 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGA--TATC 92859 | | || ||||| || ||| | || || ||||| || || || ||||||||||| |||| Sbjct 153786742 TCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATC 153786683 Query 92860 GA---ATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTT-TCACCGATCAACTCGT 92915 | | ||| | |||| |||| || || || ||| | | | | | || Sbjct 153786682 CATAAAATCAA-ATAGATT---TTCT--GCTCTAAAAATCTTGCTAAAAGCT-AGTTCCA 153786630 Query 92916 ACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 ||| | ||| || ||||||||||| || || || ||| ||| ||||||||||| | Sbjct 153786629 ACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAA 153786570 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | |||||| | ||| || ||||| || || | || ||| ||| || | | Sbjct 153786569 TCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGA 153786510 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| | ||| | | || || || ||||| | | ||| |||||||||| | Sbjct 153786509 TCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAGCAGG 153786450 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCT 93154 |||| || ||||||||| || |||| || || | || ||||| || ||||| || Sbjct 153786449 CAAAATCACAATGTAAACCCTCATCTC-TGCTAATAAATTCATTTGAAAAAGTTAATCCA 153786391 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | |||||||||||| |||| ||||| || |||||| ||||||||| || || Sbjct 153786390 GGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATT 153786331 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| || |||||||| || ||| |||||| || | |||| || | ||| Sbjct 153786330 CCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATC 153786271 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | || ||||| || ||||| || |||| ||||||||||||||| || || || || Sbjct 153786270 CA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAG 153786213 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | | || | || ||||| || || | ||| |||||||||| Sbjct 153786212 AGAAATTCCCTTTCTTTAGGGTC-CTTA-ATATGTGTCAATAAGAAGACTATACATTTCA 153786155 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||| ||| |||||||||||||||| || ||||| || | ||||| || | ||| Sbjct 153786154 GAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGT 153786095 Query 93455 ACTTCTTGAGAAAATCTC-TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 |||||||| ||| | | || || | ||||||||| ||||| ||||| ||||||||| Sbjct 153786094 ACTTCTTGGCTAAACCGCTTCAACCA-ATTTTCATTTACTATGCCATCACTTGCTGCAAA 153786036 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAAGCTTATCCCAAT-CG 93571 || | || | || ||| || | ||||| ||| ||| || || ||||| | | Sbjct 153786035 GAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTT-TCCCAGTGCT 153785977 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 || | ||| || |||||||| || || || | ||||| || || || |||||||| || Sbjct 153785976 GA-ATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTA 153785918 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||||| | || ||||| || || | ||| || || |||||||| || Sbjct 153785917 TACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCG 153785871 >seq2 Length=541556283 Score = 288 bits (318), Expect = 1e-72 Identities = 539/779 (69%), Gaps = 11/779 (1%) Strand=Plus/Minus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || ||||||||||| ||||| || ||| ||| ||||||||||| | Sbjct 435770986 ATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATC 435770927 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | || | | | || || |||||||| || | || ||| ||| || || | | Sbjct 435770926 AATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGAT 435770868 Query 93038 A-TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 | ||||| | ||| | | || || || || || | | ||| |||||||||| || Sbjct 435770867 AATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGC 435770808 Query 93097 AAAG-TCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCT 93154 ||| || ||||||| | || |||| || || || | |||| || ||||| || Sbjct 435770807 AAAAATCACAATGTAAATCCTCATCTC-TGCTAATAAGTTCATTTGAAAAAGTTAATCCA 435770749 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | ||||||||||||||||| ||||| || |||||| ||||||||| || || Sbjct 435770748 GGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATT 435770689 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| || |||||||| || |||| | |||| || | |||| || | ||| Sbjct 435770688 CCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATC 435770629 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 ||| ||| ||||| || ||||| || |||| ||||||||||||||| || || || || Sbjct 435770628 CATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAG 435770569 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | | || || || || || || | ||| |||||||||| Sbjct 435770568 AGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCA 435770509 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC-TAGCTTCCGTGATCTG 93453 ||||| | |||||||| |||||||||| || ||||| || | ||||| || | || Sbjct 435770508 GAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTA 435770449 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 |||||||| ||| | ||| || | ||||||||| | ||| ||||| ||||||||| Sbjct 435770448 TACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAA 435770389 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTT-TAAGCTTATCCCAATCG 93571 ||||| || | ||| ||| || | ||||| ||| ||| ||||| ||||| | Sbjct 435770388 GAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCT--TCCCAGTGC 435770331 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 | ||| || |||||||| || || || | ||||| || || || | || ||| || Sbjct 435770330 TGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTA 435770271 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 ||||| | ||| ||||| || || | ||| || || |||||||| || || || || || Sbjct 435770270 TACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCGCTTGGGATTCTC 435770212 >seq1 Length=748055161 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || ||||| || || | | ||||||||||||||||| ||||| || |||||| |||| Sbjct 529237662 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 529237721 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || ||||| || |||||||| || || | |||||| Sbjct 529237722 GAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACGACACGTTC 529237765 >seq3 Length=527952102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 93463 AGAAAATCTC--TCT-ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 |||||||| | ||| || || |||||||||||||| ||||| |||||||||||||| Sbjct 368175344 AGAAAATCACCATCTTACCAGGTTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGC 368175403 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||| ||||| || |||| |||||||| ||| || || | ||||| | ||||| Sbjct 368175404 CAAGATATGAGAGATGAAATACTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATC 368175463 Query 93580 TTTTGAAAGATCGAC 93594 ||||| | ||| || Sbjct 368175464 CTTTGATAAATCAAC 368175478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556825884827840