Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 2e-14 seq3 89.7 1e-12 seq9 84.2 4e-11 >seq2 Length=541556283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 167065897 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 167065956 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 167065957 TCCCGGCAGAGA 167065968 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494591892 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494591833 Query 142564 CCCACATCGGGCAGAA 142579 ||||| | |||| ||| Sbjct 494591832 CCCACGTTGGGCGGAA 494591817 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494593275 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494593334 Query 142564 CCCACATCGGGCAGAA 142579 ||||| | |||| ||| Sbjct 494593335 CCCACGTTGGGCGGAA 494593350 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 257985930 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 257985989 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 257985990 CCCCACGTTGGGC 257986002 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 ||| | | |||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 494550400 GTGTGGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 494550459 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||||||||| | |||| Sbjct 494550460 GTTCGAGCCCCACGTTGGGC 494550479 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 258001446 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 258001387 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 258001386 CCCACGTTGGGC 258001375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494550598 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494550657 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 494550658 CCCACGTTGGGC 494550669 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494592085 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494592026 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 494592025 CCCACGTTGGGC 494592014 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494630646 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494630705 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 494630706 CCCACGTTGGGC 494630717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494677095 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494677036 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 494677035 CCCACGTTGGGC 494677024 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 494549630 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 494549571 Query 142564 CCCACATCGGG 142574 ||||| | ||| Sbjct 494549570 CCCACGTTGGG 494549560 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||| Sbjct 494593082 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAGTCTCAGGGTCGTGGGTTCGAGC 494593141 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 494593142 CCCACGTTGGGC 494593153 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 447654023 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 447654082 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 447654083 CCCACGTTGGGC 447654094 >seq9 Length=79335909 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 22384251 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 22384192 Query 142567 ACATCGGGC 142575 || | |||| Sbjct 22384191 ACGTTGGGC 22384183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027770743498456