Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 seq2 116 3e-21 seq6 111 1e-19 seq9 91.5 1e-13 seq7 91.5 1e-13 >seq3 Length=527952102 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || || |||||| |||||| || || || || Sbjct 475401251 GTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCG 475401192 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 475401191 GCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 475401132 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | || ||||| ||||| || Sbjct 475401131 ACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 475401072 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 475401071 TTCACAAATATCTGCAT 475401055 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||||| |||||| || || ||||| Sbjct 475400795 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTACCG 475400736 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| |||||| || Sbjct 475400735 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 475400676 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | ||||| || |||| || Sbjct 475400675 ACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAGGTC 475400616 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 475400615 TTCACAAAGATCTGCATG 475400598 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||||| |||||| || || ||||| Sbjct 475401023 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTACCG 475400964 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| |||||| || Sbjct 475400963 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 475400904 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || |||| ||| | || ||||| |||| || Sbjct 475400903 ACATTCTCAATGGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 475400844 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 475400843 TTCACAAAGATCTGCATG 475400826 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||||| |||||| || || ||||| Sbjct 475400339 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTACCG 475400280 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| |||||| || Sbjct 475400279 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 475400220 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || || | ||| | || ||||| ||||| || Sbjct 475400219 ACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTAATGGTCTTGCCAGTCAGGGTC 475400160 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 475400159 TTCACAAAGATCTGCAT 475400143 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || |||||||| || |||||||| || || || ||| |||||| Sbjct 475400579 ACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCT 475400520 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||| || |||| || | ||| ||||| || || |||||||||||||| Sbjct 475400519 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 475400460 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| || | | |||| |||||| ||| ||| || || | ||| | || ||| Sbjct 475400459 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTG 475400400 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || || |||||||| Sbjct 475400399 CCAGTCAAGGTCTTCACGAAGATCTGCAT 475400371 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||||| |||||| || || || || Sbjct 475400111 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTCCCG 475400052 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| |||||| || Sbjct 475400051 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 475399992 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || || | ||| | || ||||| ||||| || Sbjct 475399991 ACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 475399932 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 475399931 TTCACAAAGATCTGCATG 475399914 >seq2 Length=541556283 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || || |||||| |||||| || || || ||| Sbjct 204601998 GTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCA 204602057 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| |||||| || Sbjct 204602058 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 204602117 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | || ||||| |||| || Sbjct 204602118 ACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 204602177 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 204602178 TTCACAAATATCTGCAT 204602194 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 114187 TAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAG 114246 ||||||||||||| |||||||| | || |||||| |||||| || || || || | Sbjct 230790964 TAGATTCTTTTTGGATGTTGTAGTTAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGG 230791023 Query 114247 CGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTA 114306 | |||| || | ||| ||||| | ||| |||||||||||||| |||||| || | Sbjct 230791024 CAAAGATCAGTCTCTGCTGGTCTGCAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGA 230791083 Query 114307 GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 | |||| |||||| ||| ||| || || | ||| Sbjct 230791084 CATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGT 230791120 >seq6 Length=292091736 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||||||||||||||| || || |||||| |||||| || || || || Sbjct 193103627 GTGGATTCTTTTTGAATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTCCCG 193103568 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 193103567 GCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 193103508 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | || ||||| ||||| || Sbjct 193103507 ACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 193103448 Query 114366 TTTACA 114371 || ||| Sbjct 193103447 TTCACA 193103442 >seq9 Length=79335909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || || | | | || ||| || | |||||| Sbjct 56184808 GTGGATTCTTTTTGGATGTTGTAGTCAGACAGGATGCAACCATATTCTAGCTACTTACCA 56184867 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 56184868 GCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTG 56184927 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || |||| ||| | || ||| | |||| || Sbjct 56184928 ACATTCTCAATGGTATCACTGGGCTCCACTTCCAAGGTGATAGTCTTGTCAGTCAAGGTC 56184987 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| |||||||| Sbjct 56184988 TTCACAAAGGTCTGCATG 56185005 >seq7 Length=260857928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| ||||||||||| || || || | |||||| || || || || Sbjct 53450100 GTAGATTCTTTCTGAATGTTGTAGTCAGACAGGGTGCAGCCATCTTCCAGCTGCTTGCCT 53450159 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 | ||||||| | ||| ||||| || | |||||| |||||||| || || ||| Sbjct 53450160 GAAAAGATGAGCCTCTGCTGGTCAGGTGCAATGCCCTCTTTGTCTTGGATTTTGGCCTTT 53450219 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || |||| ||| | | ||||| ||||| || Sbjct 53450220 ACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGGCAATCTTGCCTGTCAGGGTC 53450279 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 53450280 TTCACAAAGATCTGCATG 53450297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420108716133792