Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 100 5e-16 seq1 84.2 4e-11 >seq4 Length=435153693 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| ||||| || |||||||||||||| ||| |||||||| | | |||||| ||| Sbjct 349049281 CATAAAGAGATCTGGGATCCAGAGGGCAAAGAAAAGGTCCCTAGCTCGCTGCTCTTCCTT 349049222 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| ||| || | || ||||||||||| | ||||| || |||| ||| Sbjct 349049221 TCCAGTGTTCTTCTTCAAATCAAGGAATTCAAAGACGTCTAAATGCCATGGTTCCAAGTA 349049162 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 || ||| | || || || |||| Sbjct 349049161 GATAGCAAATGCCCCAGGTCGCT 349049139 >seq1 Length=748055161 Score = 84.2 bits (92), Expect = 4e-11 Identities = 248/376 (66%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 242839 GGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGCA 242898 |||| ||||| || | |||| ||| | |||||| | || ||| | || ||| | |||| Sbjct 280072402 GGGGTGCCCTCATTGTGTTGGAGGGCATGGATCGTGCTGGGAAGACTACCCAGGGCCGCA 280072461 Query 242899 TGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGACA 242958 ||| || |||||||||| || ||| | || |||||| | | ||||| || | Sbjct 280072462 AGCTCGTGGCGGCCCTGCTGCAGTCCGGACACCCAGCGGAGCTGCTCCGATTCCCAGAGA 280072521 Query 242959 GGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGACG 243018 | |||| || || || || | ||| |||||| || |||| | |||| | Sbjct 280072522 GATCCACAGAAATTGGCAAGCTGCTGGGCTCTTACCTGGAGAAGAAGAAAAACATGGAGG 280072581 Query 243019 ATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA--AGCCGCCTCCGACCTGAA 243076 | ||| ||||||||||| || || || ||||| ||||| || ||| || | || Sbjct 280072582 ACCACACAGTACACCTCCTTTTTTCTGCAAACCGCTGGGAGCAGGTACCTTTGA--TCAA 280072639 Query 243077 GCGCAAGCT--GATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGTTCTCCGGCGTA 243134 ||||| | ||| |||| ||| | ||| | ||| | ||||| ||||| || || Sbjct 280072640 AGAAAAGCTCAGTTGAGGGGT--CACACTTGTGGTAGACAGATACGCCTTCTCTGGTGTG 280072697 Query 243135 GCCTTCAC-GGCGGCGAAGCCCGGGTTCGAGCTCGAGTGGTGTAAGCGAACCGACGTGGG 243193 |||||||| | | | ||| || | || || |||||||||| | || ||||| Sbjct 280072698 GCCTTCACAAGTGCCAAAGAGAATTTTTCA-CTGGACTGGTGTAAGCAGCCTGATGTGGG 280072756 Query 243194 TCTGCCCAAGCCCGAC 243209 || || ||||| ||| Sbjct 280072757 GCTCCCAAAGCCAGAC 280072772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944279989932160