Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq3 98.7 9e-16 >seq5 Length=304825324 Score = 143 bits (158), Expect = 2e-29 Identities = 426/654 (65%), Gaps = 16/654 (2%) Strand=Plus/Plus Query 20170 TAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCC 20229 ||||||||| ||||| | | || | || |||||||||| | ||| | ||| || || Sbjct 43288194 TAGTGGCTCAATATGATTCTCATATACATGAGCATCTCCCAGAGAGTGTACAAAATCACC 43288253 Query 20230 GGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTT 20289 || | || || || | ||||||| ||| || || | ||||| || ||||||||| | Sbjct 43288254 TGGCTTCAGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGT 43288313 Query 20290 AAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 || || || || | ||||| ||||| || | ||| || ||||||||||||| |||||| Sbjct 43288314 GAACGGCACCCCAAGGCCCATATCTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACC 43288373 Query 20350 GTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTC 20409 | ||||| || || ||||| | ||| || | || | ||||| | | | || Sbjct 43288374 ATTTGCTACGTAGAACTGACAGAGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATC 43288433 Query 20410 CGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATC 20469 || |||| |||||||||||||| ||||| || | || || |||| ||| || Sbjct 43288434 TTTTGGACTCCAAGCACACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTC 43288493 Query 20470 CACAATGTACGACAATTGGT--CAAAC-----CCCTGGCCTGTATAGTCAGCATCCGCGT 20522 | ||| || || || || || || || | ||| || | | | | Sbjct 43288494 -------GATGACTTTTTGTAGCAGACCCACTCCTTGCCCAGAATAATCTGTGTTCATCT 43288546 Query 20523 CCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCT 20582 | ||| | |||||||| || ||||||||||| | | || ||||||||| || ||| Sbjct 43288547 CTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGGCACACACTGGTCCCAAA-CCTCCT 43288605 Query 20583 CCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATA 20642 ||||| || | | ||| | | ||| | || | || ||||| ||||| | Sbjct 43288606 -TCTTCTCTGAGTGAAGCCCAGATTGTCCAAAAGTTCACGTGACCCATTGGCATCCCAGA 43288664 Query 20643 TCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCA 20702 || | | || | || |||||| | | || | ||| | | |||||| |||| Sbjct 43288665 TCGTCATCCCCTTGGCGGAGAGCTCCTTACCATTTGTGCAACCCCTAATAAACCACAGCA 43288724 Query 20703 GCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCC 20762 | || | || || || ||| ||||| ||||| || || || || ||||| | | | Sbjct 43288725 GTTCCTCCAGGACACCCTACCAGAACACACGCTTAGTTGTCAGCAAAGGAAATTCACCTC 43288784 Query 20763 GCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGC 20816 |||| | || | |||||||| || | ||| |||||||| ||||||||| Sbjct 43288785 GCAGGTTGTAGAGGTTTTGCATGCCGAACACAGACAGGGTGCCGGTGCCGGTGC 43288838 >seq3 Length=527952102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||||| ||| || || | ||||| || ||||||||||| || || || || | ||| Sbjct 265126878 TGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCGAGGCCC 265126819 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||||| || | ||| || |||||||||||||||||||| | ||||| || || ||| Sbjct 265126818 ATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCTACGTAGAACTGA 265126759 Query 20369 CA 20370 || Sbjct 265126758 CA 265126757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441345125925440