Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 127 5e-24 seq2 118 3e-21 seq9 91.5 3e-13 >seq3 Length=527952102 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || || || || ||||| | || || || || || Sbjct 475401246 TTCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAA 475401187 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || ||||| ||| |||||||| |||||||| || || || || Sbjct 475401186 GATCAGTCTCTGCTGG---TCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGAC 475401130 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | ||||||||| || ||||| ||||| || ||||| ||||| Sbjct 475401129 ATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTT 475401070 Query 288459 GACGAATATCTGCAT 288473 || ||||||||||| Sbjct 475401069 CACAAATATCTGCAT 475401055 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| || ||||| |||| ||| || | ||||| || Sbjct 451761578 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATAGTATCACTGGGCTCTACCTCA 451761519 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 451761518 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 451761475 >seq2 Length=541556283 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| || | | ||||||| |||||||| || || Sbjct 253275950 TCTTTCTGGATGTTGTAGTCAGAGAGAGTCTGGTCATCTTCTAGCTGTTTTCCAGCAAAA 253276009 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | | |||||| |||||| ||||| || ||||||||||| |||| | |||| Sbjct 253276010 ATCAAATGTTGTTGATCTAGTGGGATACCTTCCTTGTCCTGGATTTTGACTTTGATGTTT 253276069 Query 288403 TCTATAGAATC-GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 | |||| ||| || | |||| || || ||||| ||||| || ||||| ||||| || Sbjct 253276070 TTGATAGTATCAACTGGGCTCTATATCAAGAGTGATAGTCTTGCCTGTCAGGGTCTTCAC 253276129 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 253276130 AAAGATCTGCAT 253276141 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || || || || ||||| | || || || || || Sbjct 204602003 TTCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAA 204602062 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || ||| ||||| |||||||| || ||||| || || || || Sbjct 204602063 GATCAGTCTCTGCTG---GTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGAC 204602119 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | ||||||||| || || || ||||| || |||| ||||| Sbjct 204602120 ATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTT 204602179 Query 288459 GACGAATATCTGCAT 288473 || ||||||||||| Sbjct 204602180 CACAAATATCTGCAT 204602194 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || |||| | || || || || ||||| | || || || || || Sbjct 230790968 TTCTTTTTGGATGTTGTAGTTAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAA 230791027 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || | ||||| |||||||| |||||||| || || || || || Sbjct 230791028 GATCAGTCTCTGCTGGTCTGCAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATT 230791087 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || | || || | ||||||||| || ||||| ||||| Sbjct 230791088 CTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGAT-GTCTT 230791128 >seq9 Length=79335909 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || ||| || | ||||| | || || || || Sbjct 56184813 TTCTTTTTGGATGTTGTAGTCAGACAGGATGCAACCATATTCTAGCTACTTACCAGCAAA 56184872 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || ||| ||||| |||||||| |||||||| || || || || Sbjct 56184873 GATCAGTCTCTGCTG---GTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGAC 56184929 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| || | || ||||| | ||||| ||||| | |||| ||||| Sbjct 56184930 ATTCTCAATGGTATCACTGGGCTCCACTTCCAAGGTGATAGTCTTGTCAGTCAAGGTCTT 56184989 Query 288459 GACGAATATCTGCAT 288473 || || ||||||| Sbjct 56184990 CACAAAGGTCTGCAT 56185004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179578586560848