Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 5e-13 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | | || || ||||| ||||||||||| | Sbjct 475401281 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 475401222 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || |||| | |||| || | ||| ||||| ||||| Sbjct 475401221 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 475401162 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| || | | || | |||||| | | || || Sbjct 475401161 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 475401102 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || ||||| |||||||| Sbjct 475401101 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 475401055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | || || || || ||||||||||| | Sbjct 475400369 CCACCTCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400310 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || ||||||| | |||| || | ||| ||||| || || Sbjct 475400309 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400250 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| || | | || | ||| || | | |||||| Sbjct 475400249 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACT 475400190 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || ||||| |||||||| Sbjct 475400189 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 475400143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || ||||| || || || || ||||||| | Sbjct 475400792 GATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTACCGGCA 475400733 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| ||| || | Sbjct 475400732 AAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACA 475400673 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | || || || | || | ||||||||||||| || || Sbjct 475400672 TTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTC 475400613 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 475400612 ACAAAGATCTGCATG 475400598 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || ||||| || || || || || |||| | Sbjct 475400108 GATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCTAGCTGCTTCCCGGCA 475400049 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| ||| || | Sbjct 475400048 AAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGACA 475399989 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | | |||||| || | || | || || |||||||| || || Sbjct 475399988 TTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 475399929 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 475399928 ACAAAGATCTGCATG 475399914 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | || || || || ||||||||||| | Sbjct 475401053 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400994 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || ||||||| | |||| || | ||| ||||| || || Sbjct 475400993 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400934 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| || | | || | ||| || | | |||||| Sbjct 475400933 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACT 475400874 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||||| || || ||||| ||||||||| Sbjct 475400873 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 475400826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496231284347520