Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq2 84.2 2e-11 >seq1 Length=748055161 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| | |||||||||||| || || || |||||||| || || || | | | ||| Sbjct 532227688 AACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTA--GGCAGATAAAGTACGTCCATCT 532227631 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || |||||||| | ||||| | ||||| || ||||| |||||||| || Sbjct 532227630 TCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCCTTATCT 532227571 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| ||||||||| ||| || || | || ||||| Sbjct 532227570 TGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTTCAACCTCAAGAGTGATGGTC 532227511 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||| |||| ||||| ||||| Sbjct 532227510 TTCCCCGTCAAAGTCTTTATGAAAATCTGCAT 532227479 >seq2 Length=541556283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG-CGTCTTCTAATTGTTTGCC 15038 || || ||||| || |||||||| || |||| | || | | ||||||| ||||| || Sbjct 253275944 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGT-CTGGTCATCTTCTAGCTGTTTTCC 253276002 Query 15039 AGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTT 15098 ||| | |||||| | ||||| || ||| || ||||||||||| |||||| ||| Sbjct 253276003 AGCAAAAATCAAATGTTGTTGATCTAGTGGGATACCTTCCTTGTCCTGGATTTTGACTTT 253276062 Query 15099 TACAATTTCTATAGTATC-GCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| |||||||| || |||| || | || || || || |||||||| | Sbjct 253276063 GATGTTTTTGATAGTATCAACTGGGCTCTATATCAAGAGTGATAGTCTTGCCTGTCAGGG 253276122 Query 15158 TTTTTACAAAAATTTGCATATTTGAAA 15184 | || ||||| || ||||| | || || Sbjct 253276123 TCTTCACAAAGATCTGCATCTCTGCAA 253276149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357370151733560