Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 >seq2 Length=541556283 Score = 168 bits (186), Expect = 1e-36 Identities = 220/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||||||||||||||| || || || ||||| || | Sbjct 82227232 AACACTGAATGCAGTGAAGGGACATCCCTTCACATTATTGCAGATAAGTGACTGGATAGA 82227291 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || ||||| | || || |||||||| | || || || ||||| || ||||||||| | Sbjct 82227292 GGCTGTTTTGATAATTTCAAAACCTACATTTCCACCAAAAGTGCTAGGCTTCCAGTACTC 82227351 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 ||||||||||| ||| ||||||| ||||| | ||| || || || || || || | Sbjct 82227352 AGGGGAGCAGATTGGGTTACCCATGAGTCCTTTGAGGGAGAAGGGCGCTCCAAGTTCTAC 82227411 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 | | |||| || |||||||| || ||||| |||||||| || | |||| ||| || | Sbjct 82227412 CAGGGTCTCTCCAAAGATGGCGCCCGGACGAGGTTTTTCCACCA-GAAGAGCAGGATATA 82227470 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 || | ||| |||| || ||||||| ||||||| ||| ||||| || || ||||| | Sbjct 82227471 ACTCCATAGCATCGATATCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTC 82227530 Query 9174 CT 9175 || Sbjct 82227531 CT 82227532 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 ||||| ||||||||||| ||| ||||||| || ||||| ||||| || | || || || Sbjct 82229426 GTTTGGAACAACTGCTCATCATCCCATTCAGGATGTTCTTGTTTAAGGATGTCACACACA 82229485 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||| ||||| | || |||| || ||||||||||| ||||| || ||||| ||||| Sbjct 82229486 CGGTTATGTTCCCGAAGATATATTGTAGCGTACATCATCAAACCTGGAACTAAGCCAAAT 82229545 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | || || ||||| ||||| || || | | || | || | ||| | Sbjct 82229546 ACTTCTTGTCCAACAGCAAATTTCAGATGTTCAGGGATATGAGGTGGGTAGATCATTTCT 82229605 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 |||| || ||||| || ||| ||||| | ||| || ||||| |||| Sbjct 82229606 ACCTCAGTATCTTTCACTAAGGGAGGATATACTTCTCCATCAATTACCT 82229654 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | ||||| ||||| |||| ||||| || ||||| || || |||||||| ||| Sbjct 82228540 TCAGGGAGCAGAGGGTGCCAATGGTAAAGGGTGTTAAACTCAGCAGCAATTCGGTTTTGG 82228599 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | || || ||||| | || | ||||||||| | Sbjct 82228600 TACTGAAATTGCTGGT--TGAACAGCAGTTCTGGATCAAATTTCAGTTTGAAGTGGTAAC 82228657 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | || | || |||||||| | | || | || |||||||| || || Sbjct 82228658 CACTCAAGTGTTGGACATAATCTTCAATCACGATCTTAATGGTCTCACC 82228706 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| || | ||| | ||||| | || |||| || ||| |||| Sbjct 82231167 CTTACCCCATGTCCTAGACCTTTAGTGAATTCTGGGCCTCTGTGATGGTCTGTCTTAAAG 82231226 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || ||||| || || ||||| |||| || || ||||||| || ||||| |||||||| Sbjct 82231227 AACTGGTGAGTGAAATGTTGAGCGAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 82231286 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCT 10281 || ||||| |||| | | || || ||| |||||||||| Sbjct 82231287 GGAATAAACTTCCTTCTCAGAAGAAATTTTTCCACAATCT 82231326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723682622254400