Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq3 107 2e-18 >seq2 Length=541556283 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520270716 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520270657 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520270656 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520270597 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520270596 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520270537 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520270536 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270488 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520270944 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520270885 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520270884 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520270825 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520270824 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520270765 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520270764 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270716 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520271172 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520271113 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520271112 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520271053 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520271052 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520270993 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520270992 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270944 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520271400 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520271341 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520271340 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520271281 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520271280 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520271221 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520271220 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271172 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520271856 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520271797 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520271796 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520271737 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520271736 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520271677 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520271676 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271628 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520272084 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520272025 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520272024 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520271965 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520271964 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520271905 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520271904 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271856 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520272312 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520272253 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520272252 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520272193 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520272192 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520272133 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520272132 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272084 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520272540 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520272481 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520272480 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520272421 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | |||| Sbjct 520272420 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCA 520272361 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520272360 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272312 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| |||||||| | || || || ||||| |||||||| || Sbjct 520272767 GCCACCCCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520272708 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 520272707 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520272648 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||| ||||| ||| || ||| | || | | ||||| || | ||||| Sbjct 520272647 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520272588 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520272587 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272540 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||||| | || || || ||||| |||||||| | Sbjct 520271628 TGCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 520271569 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 520271568 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 520271509 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| ||| || ||| | || | | ||||| || | || | Sbjct 520271508 GGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCTA 520271449 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 520271448 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271400 Score = 102 bits (112), Expect = 9e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | || || |||||||| | || || || ||||| |||||||| || Sbjct 253694360 GCCACCCCTAAGACACAGGACCAGATGGAGGGTGGGTTCTTTCTGGATGTTGTAGTCAGA 253694419 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||| | | || || ||||||||| | || ||||| | | ||||||||||| || Sbjct 253694420 CAGGGTGTGGCCATCTTCCAGCTGCTTGACTGCAAATATGAGCCTCTGCTGGTCGG-GGG 253694478 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||| ||||| ||| || ||| | || | | ||||| || | ||||| Sbjct 253694479 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 253694538 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 253694539 CTCCAGGGTGATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCAT 253694586 >seq3 Length=527952102 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | |||| ||||| || || || ||||| |||||||| | Sbjct 475400827 TGCCACCCCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAG 475400768 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || |||||||| ||||| || |||| | ||||||||| | | Sbjct 475400767 ACAGGGTACGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGG 475400708 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||||| || | | ||||| || | ||| | Sbjct 475400707 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTA 475400648 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || |||| || || |||||||| ||||| Sbjct 475400647 CTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565202959552320