Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 459 3e-124 seq2 423 2e-113 seq3 123 3e-23 seq1 120 3e-22 seq4 102 9e-17 >seq6 Length=292091736 Score = 459 bits (508), Expect = 3e-124 Identities = 668/930 (72%), Gaps = 23/930 (2%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCA-TTAGAATT--CATTACTCCCATTTTTTGATATT 18679 ||||||| | ||||||||| |||| || || || ||| ||||||||| | ||||||| Sbjct 153786788 CATCCAAGGTAAAAGAATT---TTCAGTTGGACTTGACATCACTCCCATTCTCTGATATT 153786732 Query 18680 CGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAAT 18739 | | ||||| || || ||||| |||||||| || || || || ||| |||||||||| Sbjct 153786731 CTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATA---TCCATAAAAT 153786675 Query 18740 CAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCG 18799 ||||| |||||| | | || | || || | || ||| ||| || | ||||| || | Sbjct 153786674 CAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCAACATAAGTCTGTCTG 153786615 Query 18800 CTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTA 18859 ||||||||| |||||| ||||| | | ||||||||||| || || || ||||| | Sbjct 153786614 CTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTACAGGCA 153786555 Query 18860 GTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGATACAACT 18918 || || || | ||| || |||||||| | || || | ||| || || | ||| Sbjct 153786554 AAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCAT-TGACGATCATTTCTTTCACT 153786496 Query 18919 CTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGT 18978 | || || ||| || || || ||||| ||||| || || ||||||||||||||| Sbjct 153786495 TTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAGCAGGCAAAATCACAATGT 153786436 Query 18979 AGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtt 19038 | ||||| ||||| || || |||||||| ||||| ||||| |||||||| | |||| | Sbjct 153786435 AAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGT 153786376 Query 19039 ttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCA 19098 || || ||||||||| || ||||| || ||||||||||| || ||||| ||||||||| Sbjct 153786375 TTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCA 153786316 Query 19099 AAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAA 19158 ||||| | | | ||| ||||| | || || || | |||||| ||| ||||| Sbjct 153786315 AAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATCCA--TCAAGGCCCAG 153786258 Query 19159 TCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCA 19218 ||||| |||||||| ||||| || | ||| || || | ||| | ||| | || | || Sbjct 153786257 TCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGA--AGAGAAATTCCCT-T 153786201 Query 19219 TCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 ||| || || ||| ||||| || || | | ||| |||||||| ||||| ||||| Sbjct 153786200 TCTTTAGGGTCCTTA--ATATGTGTCAATAAGAAGACTATACATTTCAGAATGTCTATTT 153786143 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 | || || || || || || || || || | |||||||||| ||||||||| | | Sbjct 153786142 CCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTCTTGGCTA 153786083 Query 19336 AATC-TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 || | ||| ||| |||||||||| ||||| |||||||| |||||||| || |||| || Sbjct 153786082 AACCGCTTCAACC-AATTTTCATTTACTATGCCATCACTTGCTGCAAAGAACCCTAACAC 153786024 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGA 19454 || || || | || || || || | || || | ||| | | |||||| ||||| Sbjct 153786023 GTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCAGTGCTGAATATCCTTAGA 153785964 Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 | ||| || || ||| ||||||| || || ||||||||||| |||||||||| || || Sbjct 153785963 AAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGTCAAAT 153785904 Query 19515 ATCACGATATTGTATAGGAAATATAACAAA 19544 ||| | || | || || || || ||||| Sbjct 153785903 GTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 423 bits (468), Expect = 2e-113 Identities = 658/930 (71%), Gaps = 14/930 (2%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||| | |||||||||||| || || || ||| ||||||||| | |||||||| Sbjct 435771150 CATCCAAGGTAAAAGAATTCTCAG--TTGGACTTGACATCACTCCCATTCTCTGATATTC 435771093 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || || ||||| |||||||| || || || || ||| ||||||||||| Sbjct 435771092 TCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCCATAAAATC 435771033 Query 18741 AAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGC 18800 ||||||||||| | | || | || || | || |||| ||| || | ||||| || || Sbjct 435771032 AAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGTTCCAACATAAGTCTGTCTGC 435770973 Query 18801 TACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAG 18860 |||||||| ||| ||| ||||| | | ||||||||||| || ||||| | | | | Sbjct 435770972 TACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTTTATATGCAA 435770913 Query 18861 TGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGATACAACTC 18919 | || || | || || |||||||| | || || |||| ||||| | ||| Sbjct 435770912 AGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGATAATTTCTTTCACTT 435770854 Query 18920 TATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA-TCACAATGT 18978 | || || ||| || | || ||||| ||||| || || |||||| ||||||||| Sbjct 435770853 TTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGCAAAAATCACAATGT 435770794 Query 18979 AGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtt 19038 | |||| ||||| || || | |||||| ||||| ||||| |||||||| | |||| | Sbjct 435770793 AAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGT 435770734 Query 19039 ttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCA 19098 || || | ||||||||| || ||||| || ||||||||||| || ||||| ||||||||| Sbjct 435770733 TTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCA 435770674 Query 19099 AAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAA 19158 ||||| || | ||| ||||| | || || || | ||||||| | ||||| Sbjct 435770673 AAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATCCATCATAAGGCCCAG 435770614 Query 19159 TCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCA 19218 ||||| |||||||| ||||| || | ||| || || | ||| | ||| | || | || Sbjct 435770613 TCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGA--AGAGAAATTCCCT-T 435770557 Query 19219 TCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 ||| || || |||| ||| | || || | | | | |||||||| ||||| || | Sbjct 435770556 TCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGAATGTATGCTC 435770497 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATC-TTGCTTCTGTTATCTGTACTTCACTACA 19334 || || | || || || || || || || | |||||||||| || |||||| | Sbjct 435770496 TCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTATACTTCTTGGCT 435770437 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 ||| | || |||||||||||||| | ||| |||||||| |||||||| || ||||| || Sbjct 435770436 AAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAAGCTAACAC 435770377 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGA 19454 ||| || || | || || || || | || | | ||| | | ||||| ||||| Sbjct 435770376 ATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCCCAGTGCTGCATATCCTTAGA 435770317 Query 19455 TAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 | ||| || || ||| ||||||| || || |||| || ||| |||||||||| ||| || Sbjct 435770316 AAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTATACATGTGCCAAAT 435770257 Query 19515 ATCACGATATTGTATAGGAAATATAACAAA 19544 ||| | || | || || || || ||||| Sbjct 435770256 GTCATGGTACTCAATGGGGAAGATGACAAA 435770227 >seq3 Length=527952102 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||| ||| || | |||||| || || || | |||||||| || ||||| |||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| |||||| || || || ||||| || ||||| || || ||||||| Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||||||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||||| |||||||||||||| ||||||||||| || || | ||| || Sbjct 368175360 ACCAGGTTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATATGAGAGATG 368175419 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| || |||||||| | | | | ||||||| | || ||| || |||||||| || Sbjct 368175420 AAATACTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCCTTTGATAAATCAAC 368175478 >seq1 Length=748055161 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| ||||| |||||||| | |||| ||| | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 19103 CAAC 19106 | || Sbjct 529237753 CTAC 529237756 Score = 113 bits (124), Expect = 5e-20 Identities = 107/135 (79%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||| | |||||||||||| || || || ||| ||||||||| | |||||||| Sbjct 529233524 CATCCAAGGTAAAAGAATTCTCAG--TTGGACTTGACATCACTCCCATTCTCTGATATTC 529233581 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || || ||||| ||||||||||| || || || ||| ||||||||||| Sbjct 529233582 TCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCCTTCCAAAGAGATATTCTCCATAAAATC 529233641 Query 18741 AAATGGATTTTTTAC 18755 ||||||||||| ||| Sbjct 529233642 AAATGGATTTTCTAC 529233656 >seq4 Length=435153693 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | || || | |||||| || | Sbjct 349067364 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCAGCAATATGGATGT 349067305 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| |||||||||||||| ||||| ||||||||||||||||| | | || | Sbjct 349067304 TCAAAGACTGACTCTGATCAATGAATGCCCCTCTATCAGCTGCCATCTTGAGAACAGTTT 349067245 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| || ||||| || || ||||| | || || | |||||| || Sbjct 349067244 TCTGTGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCTTCAGG 349067196 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 48913 CATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTA 48972 || |||| || | ||| |||||||||||||| | |||||| | || || || || |||| Sbjct 349039785 CACCACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTA 349039726 Query 48973 ATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATAT 49032 | || ||||||||||| || | || || | || || | |||| || || || | | Sbjct 349039725 AGATGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGT 349039666 Query 49033 CTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCAT 49081 ||||||| || || || || | |||| |||||| ||||||||||| Sbjct 349039665 CTAATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCAT 349039617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562073555778240