Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6 327 1e-84 seq2 320 2e-82 seq1 143 3e-29 >seq6 Length=292091736 Score = 327 bits (362), Expect = 1e-84 Identities = 522/736 (71%), Gaps = 21/736 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||||||||| |||| |||| ||||| || || || || |||| Sbjct 153786754 CATCACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCGAAGAAGTTAGTTTTCCCTT 153786696 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | | || |||| |||||||||||||| |||| || || | || | ||| | | Sbjct 153786695 CCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAG 153786639 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATA 37048 || |||| || ||| || || || |||||||| || |||| ||||| || || Sbjct 153786638 CTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAA- 153786580 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| | ||||| || | || || | ||| | ||||||| | || Sbjct 153786579 -TTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAAC 153786521 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTT 37165 ||||| | || || | | | |||| ||| || || | | || | ||| Sbjct 153786520 AGCAT---TGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTT 153786464 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| ||| || |||||||||||||||||||| |||||||| || || |||||||| || Sbjct 153786463 GAACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGA 153786404 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| |||||||| ||||||||||||| ||| || ||| ||||| | ||||||||| || Sbjct 153786403 AAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACC 153786344 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||||||||| || ||||||||||||||||| ||| ||| |||| ||| | |||| Sbjct 153786343 AGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTC 153786284 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || |||||| | | ||| || || || ||||||||| | |||||| Sbjct 153786283 TTTGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTC 153786226 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || || |||||||| | |||||| | || ||| ||| || ||||| || | Sbjct 153786225 AATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTC-CTTA-ATATGTGTCAATAAGAAG 153786168 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||||||||| || ||||| | || || || || || ||||| || || | || Sbjct 153786167 ACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGC 153786108 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTT-AGCTAAGTTTTCATTAACTATCCCAT 37584 ||| | || || || || | ||||| ||| | | || |||||||| ||||| |||| Sbjct 153786107 TTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCAT 153786049 Query 37585 CACTAGCTGCAAAGAA 37600 |||| ||||||||||| Sbjct 153786048 CACTTGCTGCAAAGAA 153786033 >seq2 Length=541556283 Score = 320 bits (354), Expect = 2e-82 Identities = 526/749 (70%), Gaps = 16/749 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||||||| | ||||||||||| |||| | ||||| || || || || ||||| Sbjct 435771116 CATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTC 435771057 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | || ||||| |||||||||||||||||||| || || | || | ||| | Sbjct 435771056 CAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACC 435770997 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATAG 37049 || |||| || ||| || || || |||||||| ||||||| ||||| || || Sbjct 435770996 TAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA-- 435770939 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| | ||||| | | | || | ||||| | | || ||||| | || Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTT-CTATTCTAAC 435770880 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA----TT 37164 |||| | || ||| | | | |||| ||| || || | | | || | || Sbjct 435770879 AGCAC---TGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCT-TGTGAACCAGGTGTT 435770824 Query 37165 TAAACAATAAACATGCAAAA-TCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 | |||| ||| || |||||| |||||||||||| | |||||||| || || | |||||| Sbjct 435770823 TGAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTT 435770764 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| |||||||| ||||||||||||| ||| || | ||| ||||| | ||||||||| Sbjct 435770763 GAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 435770704 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||||||||| || ||||||||||||||||| ||||||| | || ||| | |||| Sbjct 435770703 CCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCT 435770644 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTT 37403 | || ||||||| | | ||| || || || ||||||||| | |||| Sbjct 435770643 TCTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTT 435770584 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||| || || |||||||| | |||||| | || | |||||||| ||||| || Sbjct 435770583 TCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGA 435770524 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA-CCT 37522 | | ||||||||||||| || || | || || | || || || ||||| || || | Sbjct 435770523 AGATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGG 435770464 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | || | || || | ||||| || | || |||||||| | ||| || Sbjct 435770463 GGCTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCC 435770404 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT 37611 |||||| |||||||||||||| | |||| Sbjct 435770403 ATCACTTGCTGCAAAGAAAGCTAACACAT 435770375 >seq1 Length=748055161 Score = 143 bits (158), Expect = 3e-29 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| |||||||| ||||||||||||| ||| || Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 529237755 ACGACACGT 529237763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||||||||| |||| |||| ||||| || || || ||||||| Sbjct 529233558 CATCACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCGAAGAAGTTAGTTTTTCCTT 529233616 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | | || ||||| |||||||||||||||||||| Sbjct 529233617 CCAAAGAGATATTCTCCATAAAATCAAATGGATT 529233650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592279661736640