Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5 325 3e-84 seq3 233 2e-56 seq2 109 4e-19 seq6 89.7 4e-13 >seq5 Length=304825324 Score = 325 bits (360), Expect = 3e-84 Identities = 448/623 (72%), Gaps = 4/623 (1%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||| || || || || | || |||||| | || || || || | |||| | | Sbjct 43288157 TGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCAT 43288216 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | || ||||| |||||||| | ||| ||||| || || || | || || |||| ||||| Sbjct 43288217 ATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAG 43288276 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| ||||| || ||||| ||||| ||| | || || ||||| || ||||| | Sbjct 43288277 CAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATAT 43288336 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCTCACGTAAAACTGACAC 30003 | || || | ||| || |||||||| || | ||| || | ||| ||||| |||||||| Sbjct 43288337 CTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCT-ACGTAGAACTGACAG 43288395 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 | | ||||||| |||| | |||||||| | ||||| || |||| || |||| Sbjct 43288396 AGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACATA 43288455 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || |||||| | |||| ||| | | | ||||| ||| || || Sbjct 43288456 ATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACCC 43288515 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || ||| || || |||| |||| || |||| ||||| || ||||| |||||| Sbjct 43288516 ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCAC 43288575 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 ||||| | |||| ||||||| |||| ||||| ||| | ||||||| |||||| Sbjct 43288576 TGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAG--TGAAGCCCAGATTGTCC 43288633 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 |||| || | || || ||||| ||||||||| | | |||||| |||||||||| || Sbjct 43288634 AAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTTA 43288693 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 |||||| | || || | ||||||||||| ||||||| ||| ||| ||| || || Sbjct 43288694 CCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCTACCAGAACACA 43288753 Query 30364 CTCTTGGTCGTGAGGAGGGGAAA 30386 | ||| || || || | ||||| Sbjct 43288754 CGCTTAGTTGTCAGCAAAGGAAA 43288776 >seq3 Length=527952102 Score = 233 bits (258), Expect = 2e-56 Identities = 359/506 (71%), Gaps = 6/506 (1%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || ||||| |||| | |||||| | || || | || | |||| || | Sbjct 37328957 TGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTAGGGACTCAATATGATTCACAT 37329016 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | || ||||| |||||||| | | ||||| || || || | || || ||| ||||| Sbjct 37329017 ATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAG 37329076 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 |||||||| ||||| || |||| ||||| ||| | || || ||||||| ||||| | Sbjct 37329077 TGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATAT 37329136 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAAACTGACAC 30003 | || || |||||| || ||||| || |||||||||| | || ||||| ||| |||| Sbjct 37329137 CTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACT-ACGTAGAACGGACAG 37329195 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 | | ||||| ||||| | |||||||| | ||||| || ||| | ||||||| Sbjct 37329196 AGAGC-TGGCATGGAGGCAAGGCCATGAGAGGAAGATCTTTTGGATTCTAAGCGCACATA 37329254 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || |||||| | |||| ||| | | |||| ||||||||| Sbjct 37329255 ATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCAGTGAC--TTTGTAGCTGATCC 37329312 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || ||| || || |||| |||| || |||| ||||| || ||||| |||||| Sbjct 37329313 ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTCTGTATTCTGCCCCAAAATGTCTCCAC 37329372 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 ||||| || ||| || |||||| ||||| ||||| ||||| ||||||| |||||| Sbjct 37329373 TGGAAGCCATAC-CCTGTCCCAAATCTCCTTCTTCTCTGTGAGTGAAGCCCAAGTTGTCC 37329431 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || | | || ||||| || Sbjct 37329432 AAAAACTCACACAACCCATTGGCATC 37329457 Score = 199 bits (220), Expect = 3e-46 Identities = 468/701 (67%), Gaps = 24/701 (3%) Strand=Plus/Plus Query 29649 TGAGCATCAGACTGCAATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGA 29708 || || ||| ||||| || |||| | |||| ||||||| ||| || |||| Sbjct 405698301 TGGGCTTCACACTGCCATATCCATCTTAATGGTCCAGTGAGGGTTGTAGCCTTCCATCAG 405698360 Query 29709 GAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29768 ||| ||||| ||||| ||||| || | || | ||| ||| | || | | |||| Sbjct 405698361 GAAGTCCTCAGCCTTGAAGTCATC-ATTTTTTACACTTTCCAGAGAATTTTGAACTTGGG 405698419 Query 29769 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 29828 || ||| | || || || |||||| | | | || || | |||| || || || Sbjct 405698420 GAAAGGTTTTGGTTCTTGCTGAAGCTGAATTGTTATTGGCTCAATATGATTCACATATAC 405698479 Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 ||| | |||||||| | ||| |||| || | | || || |||| ||||| | Sbjct 405698480 ATGAACATCTCCCAGAGAGTGTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAA 405698539 Query 29889 CAT-GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 29947 || ||| ||||| || ||||| |||| |||||| || | ||||| || ||||| || | Sbjct 405698540 TATTGTAGGTGAGCAGGGAGTAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTC 405698599 Query 29948 CCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACACATG 30006 | || | |||||| ||||| || || ||||| || || || || || |||||||| | Sbjct 405698600 CAGATCACTGGTATAGCTGCCAGGAAAGCTCATCATTCACT-ACATAGAACTGACAGAGA 405698658 Query 30007 GTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATG 30066 | ||| | || || | |||||||| ||||| | ||||| ||||| ||| Sbjct 405698659 GCATGGTATGGTGGCAAAGCCATGA--------TCTTTTGAATTCCAAATGCACATAATG 405698710 Query 30067 A--------TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30118 | | | ||||| || ||||| | |||| ||| | | | ||||| |||| Sbjct 405698711 ACAAAATGATCCTTCTGTCATCAAGGTTGGTTTTGATTTTGTCAATGACTTTTTGAAGCT 405698770 Query 30119 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30178 ||||||| || || || || |||| | || || || | ||||| || ||||| | Sbjct 405698771 GATCCACTCCTTGTCCAGAATAATCTGTGTTAATCTCTTTGAATTCTGCCCCAAAATGTC 405698830 Query 30179 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30238 |||||||||| | ||||| |||| || ||| ||||| ||||| ||||||| | Sbjct 405698831 TCCACTGGAAGTCATACACTGGTCTCAAATCT---TCTTCTCTGTGAGTGAAGCCCAGGT 405698887 Query 30239 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30298 | |||||||| | || || ||||| ||||||||||| ||||| || | ||||||| Sbjct 405698888 T-TCCAAAAATTAATGTGACCCATTGGCATCCCAGATCTTCACCCCTTTGGCAGAGAGCT 405698946 Query 30299 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | || |||||| | || || | |||| |||||| ||| Sbjct 405698947 CCTTACCATTTGTGCAACCCCTAATAAACCCCAGCAGTTCC 405698987 Score = 138 bits (152), Expect = 9e-28 Identities = 131/165 (79%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| |||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 265126890 AGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGC 265126831 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCT 29987 |||||||| ||||| || || || | |||||| |||||||| || ||||| || | ||| Sbjct 265126830 ACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCT 265126771 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| |||||||| | | |||||||||||| | |||||||| Sbjct 265126770 -ACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATGAG 265126727 Score = 125 bits (138), Expect = 6e-24 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| ||||| || ||||| ||||||||||| || ||||| ||||||| | Sbjct 265123302 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 265123243 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| ||||| || || || |||| ||||||||||| || | || || ||||| | Sbjct 265123242 CTCCTTCTTCTCTCTGAGTGAGGCCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCAT 265123183 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 |||||||||| |||||||| | |||||||| || Sbjct 265123182 CCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTT 265123149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || ||||| || ||||| || || |||||| | | |||| | ||| || || Sbjct 227415515 TTCAGTTCTCTGCTAAGAACTACATTAATTCTGTCTTTTAATGGTCGACACTTCTCAGGA 227415456 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| |||||| | ||||||||||||| ||||| |||||| Sbjct 227415455 ATGGAGAACCAGGTCTTTTTCCCCATTATCACCAGATTCTGTTTGCCT 227415408 >seq2 Length=541556283 Score = 109 bits (120), Expect = 4e-19 Identities = 354/555 (64%), Gaps = 70/555 (13%) Strand=Plus/Minus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| || ||||| |||||||| ||| | ||||| || || || | || || |||| ||| Sbjct 459841151 GTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATGTG 459841092 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 || ||| | | ||||| || | ||| |||| |||||| || | | ||||| ||||| Sbjct 459841091 AGTGATCTT--AGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCCAT 459841034 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002 || || || |||||| |||||||| || ||||| | | |||| |||| ||| Sbjct 459841033 ATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCTCATCAT---TCACT---AACTAACA 459840980 Query 30003 CATGGTGTGGCACGGAGG-AAGA-GCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCA 30059 | | |||||| |||| ||| | | |||| ||| ||||| || ||||| || || Sbjct 459840979 GAGAGCATGGCACAGAGGCAAGCCGGCGAGAGG---AAGATCTTTCGGATTCCAAGCACA 459840923 Query 30060 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30119 || | ||| | ||||| || |||||| |||| Sbjct 459840922 CATAACGATCCTTCTGTCATCAGGGTTG--------------------GTTT-------- 459840891 Query 30120 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30179 | |||| |||| || |||| ||||| || ||||| || Sbjct 459840890 --------------------AATCTGTGTTCATCTCTTTGTATTCTGCCCCTAAATGTCT 459840851 Query 30180 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30239 ||||||||| || | || ||| ||| ||| ||||| |||| ||||| | || Sbjct 459840850 CCACTGGAAACCACAGACTGGTTCCAAATCT---TCTTCGTTGTGAGGGAAGCTCAGGTT 459840794 Query 30240 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30299 |||||||||||| | || | || || ||||| ||| || || ||||||| || Sbjct 459840793 GTCCAAAAAGTCACGCGACTCATTAGCACTCCAGAACTTCAC-----TCGCGGAGAGTTC 459840739 Query 30300 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 || |||||| | || || | |||||||| || ||||||| ||| ||||| | || Sbjct 459840738 CTTATCATTTGTGCAGCCCCTAATAAACCACAGGAGTTCCTCCAGGACTCCCTTCAAGAA 459840679 Query 30360 GACCCTCTTGGTCGT 30374 || | |||||| || Sbjct 459840678 CACACACTTGGTTGT 459840664 >seq6 Length=292091736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 173/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 112072 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 112131 ||||| | |||| ||||| || || || || || || ||||| || ||||| || || Sbjct 196518405 GCCAGATAATGAACTCCATGAGGAGGTTCCTTCAGTTCTCTGCTAAGAACTACATTAATT 196518464 Query 112132 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 112191 |||||| | | ||| | ||| || || ||||||||||| ||||| || ||||||||| Sbjct 196518465 CTGTCTTTTAATGGTTGACACTTCTCAGGAATGGAGAACCAGGTCTTCCTTCCCATTATC 196518524 Query 112192 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 112251 || | |||| || | | ||||||| || | ||| | | | |||| || || Sbjct 196518525 ACTAGATTCTATTTACATTCTACTGAAGGAGTTGTGGTGATTGTCTGGAAGTACTTGAAT 196518584 Query 112252 TCTTTGC--AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG- 112308 || || | ||| | || |||| ||||| | || || ||||| ||||||||| Sbjct 196518585 TCGTTCCTGAAAAT------GG--GCCAGGGCAGGTTCCCATTCTTCCCAATGCCCATGT 196518636 Query 112309 TCT-GGACACA 112318 ||| ||||||| Sbjct 196518637 TCTGGGACACA 196518647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408592620184568