Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq3 98.7 8e-16 seq2 91.5 1e-13 seq6 84.2 2e-11 >seq1 Length=748055161 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 |||| |||| || || | ||| || || ||| || ||||| ||||| |||||| | Sbjct 532227702 CCCCGAAGCCTCAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGGCAGATAAA 532227643 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 | || | || ||||||||||| || ||||| |||| || |||||||| | |||| Sbjct 532227642 GTACGTCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATA 532227583 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC 48722 || ||||| || ||||| || ||| | | || || |||| || ||||| Sbjct 532227582 CCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTTCAACCTCA 532227523 Query 48723 ACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | || || || || ||||||||||| |||| ||||||||||||||| Sbjct 532227522 AGAGTGATGGTCTTCCCCGTCAAAGTCTTTATGAAAATCTGCATCGTG 532227475 >seq3 Length=527952102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| ||||| || || ||||| ||||| Sbjct 475401053 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400994 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||||||||||||||| ||||||| ||| || || | ||| Sbjct 475400993 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400934 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| || ||| | | | || | |||||| Sbjct 475400933 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACT 475400874 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || ||||| || || ||||| |||||||| Sbjct 475400873 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 475400827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || | ||| ||||| || || ||||| ||||| Sbjct 475400369 CCACCTCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400310 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||||||||||||||| ||||||| ||| || || | ||| Sbjct 475400309 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400250 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| || ||| | | | || | |||||| Sbjct 475400249 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACT 475400190 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| || || || |||| || || ||||| ||||||||| Sbjct 475400189 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATC 475400142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || | ||| ||||| || || ||||| ||||| Sbjct 475400826 GCCACCCCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGA 475400767 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | ||||||||||||||| ||||||| ||| || || | ||| Sbjct 475400766 CAGGGTACGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGG 475400707 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| || ||||| |||||| || ||| | | | || | || || Sbjct 475400706 GATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTAC 475400647 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 475400646 TTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599 >seq2 Length=541556283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520270715 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520270656 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520270655 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520270596 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520270595 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520270536 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520270535 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520270943 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520270884 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520270883 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520270824 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520270823 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520270764 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520270763 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270716 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520271171 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520271112 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520271111 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520271052 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520271051 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520270992 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520270991 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520271399 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520271340 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520271339 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520271280 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520271279 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520271220 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520271219 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520271855 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520271796 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520271795 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520271736 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520271735 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520271676 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520271675 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520272083 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520272024 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520272023 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520271964 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520271963 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520271904 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520271903 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520272311 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520272252 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520272251 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520272192 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520272191 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520272132 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520272131 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520272539 GCCACCCCTGAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520272480 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520272479 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520272420 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520272419 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520272360 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520272359 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 520272767 GCCACCCCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 520272708 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 520272707 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 520272648 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || || |||||| | | || || | |||||| Sbjct 520272647 GATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCAC 520272588 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 520272587 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272540 >seq6 Length=292091736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||||| || || ||| ||||||||||| ||||| ||||| Sbjct 193103657 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAC 193103598 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | |||||| |||||||| ||||||| ||| || || | || Sbjct 193103597 AGGGTACGACCATCTTCTAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 193103538 Query 48660 ACGCCCTCCTTGTC 48673 | ||| || ||||| Sbjct 193103537 ATGCCTTCTTTGTC 193103524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380914312332168