Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 168 1e-36 seq2 102 2e-16 >seq3 Length=527952102 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | | ||| | ||| |||| ||| ||||| || |||||||| Sbjct 429191499 AGCAGCTGGCAGCCGCTGTTGACGTGGCTCAGCACCTTCTGCTTGAGCTGCGCCACCTGT 429191558 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 || || |||| | ||||| || ||||| || ||||| || ||||||||| |||||| Sbjct 429191559 TCACGGAGAAGGCTGGCGGTGTTTGACAGCCCAGCGTTTTCGGACTTGAGCGTCTTCACC 429191618 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| || || || ||||| ||||| || || |||||| ||||| || ||||| Sbjct 429191619 TTGTCCTCGAGTCGAGCTATGCGCTCCAGCTTCCGTTTGCGGCACTTGGTAGCAGCCAAC 429191678 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || |||| || | ||| | |||||||| |||||||||||||||| ||| || Sbjct 429191679 CGGTTTCGCAGTCGTTTCCTCTCCACTTTGATGCGCTCCTGGTCCTCCATGTTGATGGGT 429191738 Query 241625 GAC 241627 ||| Sbjct 429191739 GAC 429191741 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| || || |||| | || || | ||| Sbjct 451184653 AGCACCTTCTGCTTGAGCTGCGCCACCTGTTCGCGGAGAAGGTTGGCCGTGGACGCCAGC 451184712 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 ||| ||| | ||| || |||||| |||||||| ||||||| ||| || ||||| Sbjct 451184713 TCTGTGTTCTGGCTCTTCAGGCTCTTCACCTTCTCCTCGAGCCGCGAGATCCGCTCCAGC 451184772 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||| |||||| |||| |||||| | ||||||||| || | ||| || ||||||||| Sbjct 451184773 TTCCGCTTGCGGCACTTGGAGGCTGCTATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTG 451184832 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| |||||| |||||||| || || ||| Sbjct 451184833 ATGCGCTCCTGGGTGTCCATGTCAATGGGCGAC 451184865 >seq2 Length=541556283 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 ||||| || ||||||||||| |||||||| ||||| || | ||||| |||| || Sbjct 33279807 TTCACCTTTTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTTTTCCGGCACTTGGACGCG 33279748 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | || ||| | |||||||||||||| |||||| |||||||||| Sbjct 33279747 GCGATGCGGTTCCTCATTCGCTTCCTCTCCGCCTTGATGCGCTCCTGGGACTCCATGTCG 33279688 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 33279687 ATAGGGGAC 33279679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931474392893440