Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 >seq6 Length=292091736 Score = 131 bits (144), Expect = 2e-25 Identities = 576/906 (64%), Gaps = 8/906 (1%) Strand=Plus/Minus Query 160131 TGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCG 160190 ||||| ||||| | | |||||| ||| || | || || ||||| | || | || Sbjct 138856394 TGTAGCATCCATTTTAAGTCTCCTACCCCAAATATACATACTGAACGGACATGAATCCCA 138856335 Query 160191 TTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACA 160250 |||||||| || || |||| || || | ||| ||||| |||| |||||||||||| Sbjct 138856334 TTGCAAGGTGGATATGGAGCACCCTTGAAAATGTCCCCTTCCAAGTATTGCCACTTCACA 138856275 Query 160251 AACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCG 160310 ||||| || | | |||||| || || | || || || | | | || || ||| Sbjct 138856274 AACCTAGCAACTGACTGCATATCAGAAATATCATACTTATTACTGGAAGAAAGGGAACCT 138856215 Query 160311 GGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCC 160370 ||||| | || || | || | |||||||||| | ||| |||||||| || || || Sbjct 138856214 GGAACTTCAGGGATTCTTTGAATTGTGGCCCACAAATATTCATCGGGGCTATATGTATCT 138856155 Query 160371 TTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGAT 160430 |||| ||| || || || | | || | | || || | || || Sbjct 138856154 TTAGCCCACTCAATAAATTTTAGAATCTTCTCATTGGTTAGTACATACTCTACATACTTC 138856095 Query 160431 CTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGG-CGTGTC 160489 || | || ||||| || || ||||| || || || ||| ||||| || |||| Sbjct 138856094 CTACTAACAACAAAATAGGCACTGCCTGAAAAAATTGGTGATTCAATAGGAGGACGTG-A 138856036 Query 160490 TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCT 160549 ||| | | || ||||| | | || | | | | | | ||||||||||| Sbjct 138856035 TTTATTTTTTCCTGTGTTTTTTAGCTTGCCCTCGATAACTTCATAATGGTTCTTCCACCT 138855976 Query 160550 GACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTT 160609 || || || | ||||| || || |||| ||||| || | | | || Sbjct 138855975 TACTTCTTTATGGGAAGGCATTTTCTCAGTTTCTAAGCTGTTTCCATCCATTAAAGTCTT 138855916 Query 160610 CAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTAT 160669 |||| | | | || || || || || || | || || || | || |||| ||||| Sbjct 138855915 TAGCTTCCTTATCATTTCCAGATTGGTTTTAATTGGGAAATCCATTCCACACAGATTTAT 138855856 Query 160670 CACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTG 160729 || || |||||||| | ||| | || || || |||||||| || | |||||| || Sbjct 138855855 CAAATATTTCCATTTTGAACTCTGTCTGTAGAGATCTCTCATGCAGTTGAGATCTGCTTG 138855796 Query 160730 CACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATC 160789 || | ||||| || || ||||| || ||||| |||| |||||| | ||||| |||| Sbjct 138855795 GACCCTACTCCATGATGCATACACAACATTCTCCAGTTGACTGGCAATGAAGACATTATT 138855736 Query 160790 GAAACACGACACGATTCC---CACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTC 160846 |||||| || | || || ||| | || | |||| | ||| | ||| ||| Sbjct 138855735 GAAACAAGATGCAATGCCCTTCACTGCTGCTAAAAAGGA-TTCT--GGAGATTTTTTGTC 138855679 Query 160847 CACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACAT 160906 ||||| | |||||| |||||||| | |||||||| || || | || || | ||| Sbjct 138855678 AACGTGAATGCAATAATAATTCTGAGGTGTGTAGATGGTTCTTAGGAGCCGATCAAGCAT 138855619 Query 160907 CTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACT 160966 || || || |||| | ||| | || || || || ||||| || ||||| ||| Sbjct 138855618 TTCGATTTTGTGATAAACCACTACTGAATATGCAATGGGAAATTCTTCTTCCTCTTTACT 138855559 Query 160967 CAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTT 161026 |||| | | | || || || ||||| || ||| | |||| || ||||| || Sbjct 138855558 GAGGGGTTCCATTATATATTTACGGGTCTTAATGAAAGCAGCACAGTCTTTGGTCATATT 138855499 Query 161027 GATATA 161032 |||||| Sbjct 138855498 GATATA 138855493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577183008356160