Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 105 9e-18 >seq3 Length=527952102 Score = 105 bits (116), Expect = 9e-18 Identities = 248/369 (67%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 47795 CAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAAT 47854 |||| ||||| || || || || || || | ||||| ||||| |||||| ||||||| Sbjct 6184775 CAATGACAAAGTCTTCTGGCTCATCAGTCTGCAACATTAGCCACAGAGCCTCAACATAAT 6184834 Query 47855 CTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCT 47914 | ||||||| ||||| || || ||||| |||| || | | ||||| || | Sbjct 6184835 CCTTGGCATGGCCCCAATCTCGCTTGGCATCCGGATTCCCCAAACTGAAACACTCCAATT 6184894 Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTG-TAATCTTACGAGTTACAAAAGTTTCACCA 47973 || | || | || | || | | || || |||||||||||| | | || Sbjct 6184895 GTCCAAG-GTGAATCCTAGCTACAGACTGGCTGATTTTTCGAGTTACAAAATTAGCCCCT 6184953 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCACT-ACAGGCATACATTCCGTATGATTC 48032 | ||| ||| |||||||| |||||||| ||| | ||| ||| ||| ||| | || Sbjct 6184954 CTTCTGGGACTCTCATGATTGAAAAGAATGCCATTCACA-GCAAACAGGTTGTAGGTCTC 6185012 Query 48033 ACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGG 48092 | | ||||| || |||||| |||| |||||||| | ||||| || || | Sbjct 6185013 AGGGAAGTTCACCACAGTCCAGTTAGCATAAAGTTTTGCTGCTCCATATGGTGACAGAAC 6185072 Query 48093 ATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGT 48152 ||| |||| || ||||| | ||||| | ||||| || || |||||||||||| | || Sbjct 6185073 ATAAAAAGTGGTAGTCTCCTTTTGTGGTATTTCTTGTACTTTTCCATAAAGTTCATTTGT 6185132 Query 48153 GGATGCTTG 48161 || ||||| Sbjct 6185133 TGAGGCTTG 6185141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665452673501120