Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq7 96.9 6e-15 seq2 87.8 3e-12 >seq1 Length=748055161 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | |||| ||| || ||| || ||| | ||||| || | ||| Sbjct 532227690 AGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGGCAGATAAAGTACGTCCATCT 532227631 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || || || || || |||||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 532227630 TCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCCTTATCT 532227571 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| |||| || | |||| |||||||||||| | ||||| || ||||| || || Sbjct 532227570 TGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTTCAACCTCAAGAGTGATGGTC 532227511 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || | || |||| || || ||||| Sbjct 532227510 TTCCCCGTCAAAGTCTTTATGAAAATCTGCAT 532227479 Score = 104 bits (114), Expect = 4e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | ||| ||| || ||| || ||||| ||||| || ||| Sbjct 723259697 AGAACAAGATGAAGGGTATACTCCTTCTGAATGTTGTAGTCAGATAAAGTATGCCCATCT 723259638 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || || || || || |||||||| ||||| |||||||||||||| | | |||| |||||| Sbjct 723259637 TCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGAGG-AATACTTCCTTATCT 723259579 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| |||| || | |||| |||||||||||| | || | | ||||| | || Sbjct 723259578 TGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTTCGAACCCAAGAGTGGTGGTC 723259519 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || | || || ||||| || ||||| Sbjct 723259518 TTCCCCGTGAAAGTCTTCACAAAAATCTGCAT 723259487 >seq7 Length=260857928 Score = 96.9 bits (106), Expect = 6e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| ||||| || ||| Sbjct 194049663 AGAACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAAAGTATGCCCATCT 194049604 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || || || || || ||||| || ||| | |||||||||||||| || ||||| |||||| Sbjct 194049603 TCCAACTGCTTGCCAGCAAAGATCAATTTTTGTTGATCAGGAGGAATACCTTCCTTATCT 194049544 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| |||| || | |||| ||||||||| || | || | ||||| || || Sbjct 194049543 TGTATCTTGGCCTTGACATTTTCAATAGTATCAGACAGTTTGACCACAAGAGTGATGGTC 194049484 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| | || || | || || |||||| Sbjct 194049483 TTCCCTGTCAAAGTCTTCATGAAAATCTGCATT 194049451 >seq2 Length=541556283 Score = 87.8 bits (96), Expect = 3e-12 Identities = 226/328 (69%), Gaps = 25/328 (8%) Strand=Plus/Minus Query 40074 atattattgatattta-tataaatttttcattttttaaattacatata-ataatataatt 40131 |||| ||| |||| || |||| ||||| ||| |||||| || |||| |||| ||| | Sbjct 482213584 ATATAATT-ATATATACTATACATTTTACATATTTTAATATATTTATATATAAAATA-TA 482213527 Query 40132 tccataaatataatgacaaatacattattatatataaaatggaaatatataaaatt-tct 40190 | ||||| || | ||||| || ||||||||||| || | ||| |||||||| | | Sbjct 482213526 TAAATAAAATTATATATAAATATATAATTATATATAAGAT--ATATAAATAAAATTATAT 482213469 Query 40191 agaaaaa----attaaaccaaaaa-atataaataaatGCATAGCCATAGTATATGATAGA 40245 | ||| | |||| | |||| ||||||||||| ||| | | ||||| || Sbjct 482213468 ATAAACATATAATTATATATAAAATATATAAATAAAATTATATATAAA-TATATAATTAT 482213410 Query 40246 AAATGCAATGAATTAACAAAAT-ATAAATATTGTTATAATCAT-TATAAAATAATGAAAG 40303 | || ||| || || ||||| ||| ||| |||||| || ||||||||| ||| Sbjct 482213409 ATATAAAATATATAAATAAAATTATATATAAATATATAATTATATATAAAATATATAAAT 482213350 Query 40304 AGTATTGTAATTTATATCATTATTGGAATAATAGATATAA-ATATCAAGATGTAGAATTA 40362 | ||| || |||| ||| ||| ||| ||| || |||| | ||||| | ||| Sbjct 482213349 AAAATTATA---TATAAACATAT---AATTATATATAAAATATATAATTATGTATATTTA 482213296 Query 40363 TATAATTTAATAGATACAGAAATAAAAA 40390 ||||||| || ||| | ||||||||| Sbjct 482213295 TATAATT---TATATAAATAAATAAAAA 482213271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899597991669120