Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 150 3e-31 seq6 147 3e-30 seq1 107 3e-18 seq7 100 4e-16 seq3 93.3 6e-14 >seq2 Length=541556283 Score = 150 bits (166), Expect = 3e-31 Identities = 420/636 (66%), Gaps = 16/636 (3%) Strand=Plus/Minus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 |||||||| ||| | ||||||||||| || || || |||||||| || || | |||| Sbjct 435771097 TATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCCATA 435771038 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTA-TTAATTCGTATAATAATCT 17988 |||||||||||||| | | || || || || || | || ||| | | | ||| Sbjct 435771037 AAATCAAATGGATTTTCTGCTCTA-AAAATCTTGCTAAAACCTAGTTCCAACATAAGTCT 435770979 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 |||||||||||||| | ||||| ||| ||| ||||||||| || | | | | | Sbjct 435770978 GTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTTTAT 435770919 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAG-ACT--CTTTTATTATGTT 18105 | | | || ||| | | || || | ||||| ||||| ||| | | ||| || Sbjct 435770918 ATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCACTGACGATAATTTCTTT 435770859 Query 18106 TA--TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC- 18162 | || ||| | ||| || | || | ||| || || || ||| || || Sbjct 435770858 CACTTTTTCCT--CTGAAGGC---TTGTGAACCAGGTG-TTTGAACAT--TAAGCAGGCA 435770807 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||||||| |||||| | ||||||||| || | ||| || ||| ||||| || || Sbjct 435770806 AAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGG 435770747 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||||| ||||| ||| || ||||| ||||| ||||| ||| || ||||||||| || || Sbjct 435770746 CATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCC 435770687 Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCA 18342 ||||| || || |||| | |||| || | | || ||| | ||||| Sbjct 435770686 TTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATCCA 435770627 Query 18343 TTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA 18402 | | ||||| || ||| | ||| |||| | || || ||||| || | Sbjct 435770626 TCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAG 435770567 Query 18403 ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGA 18462 | || ||||||| | || || ||||||||||| || | | | |||||||||||| Sbjct 435770566 AAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGA 435770507 Query 18463 ATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 ||||||||| ||||| | || || || | ||| || Sbjct 435770506 ATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAA 435770471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || |||||||| || || ||||| | ||||| ||| | Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||| || |||||||| |||||| Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGAT 204602039 >seq6 Length=292091736 Score = 147 bits (162), Expect = 3e-30 Identities = 420/637 (66%), Gaps = 26/637 (4%) Strand=Plus/Minus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 |||||||| ||| | ||||||||||| || || || |||||||| || || || |||| Sbjct 153786735 TATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGAT---ATCCATA 153786679 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAATAATCT 17988 ||||||||| |||| | | || || || || || | || ||| | | | ||| Sbjct 153786678 AAATCAAATAGATTTTCTGCTCTAAAA-ATCTTGCTAAAAGCTAGTTCCAACATAAGTCT 153786620 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 |||||||||||||||| |||||| ||| ||| ||||||||| || | | | | Sbjct 153786619 GTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTAC 153786560 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACA-----GAC--TCTTTTATTA 18101 ||| | ||| ||| | | ||| || | ||||| |||| ||| || ||| || Sbjct 153786559 AGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGATCATTTCTTT 153786500 Query 18102 TGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACG 18161 || || | || || ||| || | | | ||| || || || ||| || | Sbjct 153786499 CACTTTTTCCTCT-GA---AGGC---TTGTGTACCAGGTG-TTTGAACAT--TAAGCAGG 153786450 Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 |||||||| |||||||| ||||||||| || ||||| || ||| ||||| || | Sbjct 153786449 CAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAG 153786390 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||||| ||||| ||| || |||| ||||| ||||| ||| || ||||||||| || | Sbjct 153786389 GCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTC 153786330 Query 18282 CCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCC 18341 | ||||| || || ||| | | |||| || | | || ||| | |||| Sbjct 153786329 CTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATCC 153786270 Query 18342 ATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 | | ||||| || ||| | ||| |||| | || || ||||| || | Sbjct 153786269 A--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGA 153786212 Query 18402 AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAG 18461 | || ||||||| | || || |||| ||||| || | | | ||||||||||| Sbjct 153786211 GAAATTCCCTTTCTTTAGGGTCCTTAATAT--GTGTCAATAAGAAGACTATACATTTCAG 153786154 Query 18462 AATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 ||||| | || |||| || || || || | ||| || Sbjct 153786153 AATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAA 153786117 >seq1 Length=748055161 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || || || || ||||| || || || || || | || || ||| || Sbjct 532227479 ATGCAGATTTTCATAAAGACTTTGACGGGGAAGACCATCACTCTTGAGGTTGAACCGTCC 532227538 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 532227539 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCTCCTGATCAA 532227598 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || |||||| | |||||| | |||||||| | || || Sbjct 532227599 CAAAGATTGATTTTTGCTGGCAAGCAGTTGGAAGATGGACGTACTTTATCTGCCTACAAC 532227658 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 532227659 ATTCAGAAGGAGTCTACCCTTCAT 532227682 >seq7 Length=260857928 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || || || || ||||| || || || || || | | ||| || || Sbjct 194049451 AATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATCACTCTTGTGGTCAAACTGTC 194049510 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || || || ||||||||||| ||||| || ||||| || || Sbjct 194049511 TGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCTCCTGATCA 194049570 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| |||||| | ||| || |||||| | |||||| |||||||| || || || Sbjct 194049571 ACAAAAATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCATACTTTATCTGACTACAA 194049630 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 194049631 CATTCAGAAGGAGTCCACCCTTCAT 194049655 >seq3 Length=527952102 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || || | ||||| ||| | Sbjct 475400599 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTAGAACCCAGT 475400658 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 475400659 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400718 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||||||||||||||| |||||| Sbjct 475400719 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGAT 475400754 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || || ||||| | ||||| ||| | Sbjct 475400371 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 475400430 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 475400431 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400490 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||||||||||||||| |||||| | || | || || || || Sbjct 475400491 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 475400550 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| ||||| Sbjct 475400551 ATCCAGAAAGAATCAACTCTTCACTTAGT 475400579 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || ||||| | ||||| || | Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||||||||| || ||||| || Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400262 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||||||||||||||| |||||| Sbjct 475400263 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGAT 475400298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || || | ||||| || | Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||||||||| || ||||| || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||||||||||||||| |||||| Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGAT 475400982 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||| || || || || | ||||| ||| | Sbjct 475401055 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGT 475401114 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || ||||||||||| |||||||| || Sbjct 475401115 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCAGACCAG 475401174 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | |||||| |||||||| |||||| Sbjct 475401175 CAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGAT 475401210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731826111625600