Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 3e-25
seq1 131 3e-25
seq7 114 3e-20
seq3 109 1e-18
seq2 109 1e-18
seq5 89.7 1e-12
>seq6
Length=292091736
Score = 131 bits (144), Expect = 3e-25
Identities = 492/763 (64%), Gaps = 30/763 (4%)
Strand=Plus/Minus
Query 49648 ATAA-TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706
|||| ||| || ||||||||||| | |||||| |||||| |||||||| || |
Sbjct 153786627 ATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATC 153786568
Query 49707 AATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaat 49765
|| || | || || || ||| |||| ||| || | ||||||| ||||| | | |
Sbjct 153786567 AACTTTACAGGCAAAGCTTCAGTCAA-AAACTCCTGTTCTATTCTAACAGCAT---TGAC 153786512
Query 49766 tatcataattatattattttttgat---aatttatatttaatatgattcgcatatattaa 49822
||||| || | | | ||||| | || | | || | | | | | |||||
Sbjct 153786511 GATCAT--TTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGA-ACATTAA 153786455
Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882
|| ||||||||| |||||||||||| || || ||||||||||| |||||||||
Sbjct 153786454 GCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAA 153786395
Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942
||| |||||||| |||| || || |||| ||||| ||||||||| || |||||||||
Sbjct 153786394 TCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 153786335
Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002
|| || || || ||||| ||| | | | | ||| | || || | ||
Sbjct 153786334 GATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCC 153786275
Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062
||||| | | ||||| || ||||| ||||| | | |||||| |||| || || ||
Sbjct 153786274 AATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATT 153786217
Query 50063 AAA---TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAA-AGAAT 50118
|| ||||| ||| || | | ||| || | ||
Sbjct 153786216 GAAGAGAAATTCCCTTTCTTTA------GGGTCCTTAATATGTGTCAATAAGAAGACTAT 153786163
Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178
|||||||||||||| | | |||| || ||||| || ||| || | |||||||
Sbjct 153786162 ACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTG 153786103
Query 50179 AATACTGAACTTC--GGAAAAGAATCG-TTCAACTAAATTCTCAGATACAATACCATCAG 50235
||| ||||| || | || || |||||| |||| ||| ||| || ||||||
Sbjct 153786102 TTACCTGTACTTCTTGGCTA--AACCGCTTCAAC-CAATTTTCATTTACTATGCCATCAC 153786046
Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 50295
|||||| ||||| |||| |||| || || | || || | | || ||| |||
Sbjct 153786045 TTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTT 153785986
Query 50296 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355
|||| | || ||| || || | ||| || || || |||||| || || || | |
Sbjct 153785985 CCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTG 153785926
Query 50356 ATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAA 50398
||| |||||||| || | || ||| | |||||||| ||
Sbjct 153785925 CTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAA 153785883
>seq1
Length=748055161
Score = 131 bits (144), Expect = 3e-25
Identities = 132/172 (77%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424
||||||| || ||| |||| ||||| || || |||||||| || ||||| ||||||||||
Sbjct 532227650 CAGATAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAG 532227591
Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484
| || || ||||| ||||||||||| || || ||||| |||| ||| |||| ||
Sbjct 532227590 GAGGAATACCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTT 532227531
Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || ||||| ||||| || || || || || || || || ||||||||
Sbjct 532227530 CAACCTCAAGAGTGATGGTCTTCCCCGTCAAAGTCTTTATGAAAATCTGCAT 532227479
Score = 104 bits (114), Expect = 5e-17
Identities = 133/182 (73%), Gaps = 1/182 (1%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || |||||||| || | |||| ||||| || || |||||||| || |||||
Sbjct 723259667 ATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTT 723259608
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
||||||||||| || | | |||| ||||||||||| || || ||||| |||| |
Sbjct 723259607 TGTTGATCAGGAGG-AATACTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTA 723259549
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| |||| ||| | | ||||| |||| || || || || || || | ||| ||||||
Sbjct 723259548 TCGGACGGTTCGAACCCAAGAGTGGTGGTCTTCCCCGTGAAAGTCTTCACAAAAATCTGC 723259489
Query 192535 AT 192536
||
Sbjct 723259488 AT 723259487
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919
|||| |||||| |||||||||||| |||||||| |||| || || ||||| |||||
Sbjct 529237647 ATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATG 529237706
Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA 49968
||||||||| || ||||||||| || || || || ||||| ||||
Sbjct 529237707 GATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTA 529237755
>seq7
Length=260857928
Score = 114 bits (126), Expect = 3e-20
Identities = 135/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || |||||||| || | |||| ||||| || || ||||||||||| ||| |
Sbjct 194049633 ATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAATTTT 194049574
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
||||||||||| || || ||||| ||||||||||| || || ||||| |||| |
Sbjct 194049573 TGTTGATCAGGAGGAATACCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTA 194049514
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| ||| || || | ||||| ||||| || || || || || || || || ||||||
Sbjct 194049513 TCAGACAGTTTGACCACAAGAGTGATGGTCTTCCCTGTCAAAGTCTTCATGAAAATCTGC 194049454
Query 192535 ATT 192537
|||
Sbjct 194049453 ATT 194049451
>seq3
Length=527952102
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || ||||| | || || || || || | ||||| ||| || || |||
Sbjct 475400828 ATGCCACCCCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCA 475400769
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| || | || ||||| |||||||| | |||||| || || ||
Sbjct 475400768 GACAGGGTACGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGG 475400709
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| || || || ||||| || | || | ||||
Sbjct 475400708 GGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCT 475400649
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || |||||||||||||| || || || | ||| ||||||||
Sbjct 475400648 ACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599
Score = 84.2 bits (92), Expect = 4e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| ||| || || ||||| | || || |||| |||| || || || ||||||
Sbjct 475401245 TCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAG 475401186
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| | |||||| || || || || || |||||||| || || || || || |||||
Sbjct 475401185 ATCAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTC 475401126
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525
|| | || | ||||||||| || || ||||| || ||||| | || || | |
Sbjct 475401125 TCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 475401066
Query 192526 AATATCTGCAT 192536
|||||||||||
Sbjct 475401065 AATATCTGCAT 475401055
>seq2
Length=541556283
Score = 109 bits (120), Expect = 1e-18
Identities = 116/152 (76%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 49818 attaaACATGCAAAA-TCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAA 49876
||||| || |||||| ||| ||||||| |||| || || |||| |||||| |||
Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759
Query 49877 AGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGA 49936
||||||||| |||||||| |||| || || ||||| ||||| ||||||||| || |||
Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699
Query 49937 AAAGAATATACCCTCGACACACGCAAATGCTA 49968
|||||| || || || || ||||| ||||
Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTA 435770667
Score = 102 bits (112), Expect = 2e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| ||| || || ||||| | || || |||| |||| || || |||||||||
Sbjct 204602004 TCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 204602063
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| | |||||| || || || || || |||||||| ||||| || || || |||||
Sbjct 204602064 ATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 204602123
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525
|| | || | ||||||||| || |||||||| || ||||| || || || | |
Sbjct 204602124 TCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACA 204602183
Query 192526 AATATCTGCAT 192536
|||||||||||
Sbjct 204602184 AATATCTGCAT 204602194
>seq5
Length=304825324
Score = 89.7 bits (98), Expect = 1e-12
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| || || ||||||||||| | |||||| || || | || || ||||| |
Sbjct 77494261 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTAGGGGAATGCCTTCCT 77494320
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
| ||||| |||||| || ||||| | || | ||| | || ||||| || ||||
Sbjct 77494321 TGTCTTGAATTTTAACCTTGACATTCTTAATGGTATCACTGGGCTCCACTTCAAGGGTAA 77494380
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|||| || ||||| || || || | ||| ||||||||
Sbjct 77494381 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 77494417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984416729931600
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