Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 131 3e-25 seq1 131 3e-25 seq7 114 3e-20 seq3 109 1e-18 seq2 109 1e-18 seq5 89.7 1e-12 >seq6 Length=292091736 Score = 131 bits (144), Expect = 3e-25 Identities = 492/763 (64%), Gaps = 30/763 (4%) Strand=Plus/Minus Query 49648 ATAA-TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 |||| ||| || ||||||||||| | |||||| |||||| |||||||| || | Sbjct 153786627 ATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATC 153786568 Query 49707 AATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaat 49765 || || | || || || ||| |||| ||| || | ||||||| ||||| | | | Sbjct 153786567 AACTTTACAGGCAAAGCTTCAGTCAA-AAACTCCTGTTCTATTCTAACAGCAT---TGAC 153786512 Query 49766 tatcataattatattattttttgat---aatttatatttaatatgattcgcatatattaa 49822 ||||| || | | | ||||| | || | | || | | | | | ||||| Sbjct 153786511 GATCAT--TTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGA-ACATTAA 153786455 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 || ||||||||| |||||||||||| || || ||||||||||| ||||||||| Sbjct 153786454 GCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAA 153786395 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 ||| |||||||| |||| || || |||| ||||| ||||||||| || ||||||||| Sbjct 153786394 TCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 153786335 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002 || || || || ||||| ||| | | | | ||| | || || | || Sbjct 153786334 GATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCC 153786275 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 ||||| | | ||||| || ||||| ||||| | | |||||| |||| || || || Sbjct 153786274 AATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATT 153786217 Query 50063 AAA---TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAA-AGAAT 50118 || ||||| ||| || | | ||| || | || Sbjct 153786216 GAAGAGAAATTCCCTTTCTTTA------GGGTCCTTAATATGTGTCAATAAGAAGACTAT 153786163 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 |||||||||||||| | | |||| || ||||| || ||| || | ||||||| Sbjct 153786162 ACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTG 153786103 Query 50179 AATACTGAACTTC--GGAAAAGAATCG-TTCAACTAAATTCTCAGATACAATACCATCAG 50235 ||| ||||| || | || || |||||| |||| ||| ||| || |||||| Sbjct 153786102 TTACCTGTACTTCTTGGCTA--AACCGCTTCAAC-CAATTTTCATTTACTATGCCATCAC 153786046 Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 50295 |||||| ||||| |||| |||| || || | || || | | || ||| ||| Sbjct 153786045 TTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTT 153785986 Query 50296 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 |||| | || ||| || || | ||| || || || |||||| || || || | | Sbjct 153785985 CCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTG 153785926 Query 50356 ATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAA 50398 ||| |||||||| || | || ||| | |||||||| || Sbjct 153785925 CTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAA 153785883 >seq1 Length=748055161 Score = 131 bits (144), Expect = 3e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 ||||||| || ||| |||| ||||| || || |||||||| || ||||| |||||||||| Sbjct 532227650 CAGATAAAGTACGTCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAG 532227591 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || || ||||| ||||||||||| || || ||||| |||| ||| |||| || Sbjct 532227590 GAGGAATACCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTT 532227531 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| ||||| || || || || || || || || |||||||| Sbjct 532227530 CAACCTCAAGAGTGATGGTCTTCCCCGTCAAAGTCTTTATGAAAATCTGCAT 532227479 Score = 104 bits (114), Expect = 5e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || |||||||| || | |||| ||||| || || |||||||| || ||||| Sbjct 723259667 ATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTT 723259608 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||||||||| || | | |||| ||||||||||| || || ||||| |||| | Sbjct 723259607 TGTTGATCAGGAGG-AATACTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTA 723259549 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| ||| | | ||||| |||| || || || || || || | ||| |||||| Sbjct 723259548 TCGGACGGTTCGAACCCAAGAGTGGTGGTCTTCCCCGTGAAAGTCTTCACAAAAATCTGC 723259489 Query 192535 AT 192536 || Sbjct 723259488 AT 723259487 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919 |||| |||||| |||||||||||| |||||||| |||| || || ||||| ||||| Sbjct 529237647 ATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATG 529237706 Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA 49968 ||||||||| || ||||||||| || || || || ||||| |||| Sbjct 529237707 GATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTA 529237755 >seq7 Length=260857928 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || |||||||| || | |||| ||||| || || ||||||||||| ||| | Sbjct 194049633 ATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAATTTT 194049574 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||||||||| || || ||||| ||||||||||| || || ||||| |||| | Sbjct 194049573 TGTTGATCAGGAGGAATACCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGTA 194049514 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || ||| || || | ||||| ||||| || || || || || || || || |||||| Sbjct 194049513 TCAGACAGTTTGACCACAAGAGTGATGGTCTTCCCTGTCAAAGTCTTCATGAAAATCTGC 194049454 Query 192535 ATT 192537 ||| Sbjct 194049453 ATT 194049451 >seq3 Length=527952102 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || || || || || | ||||| ||| || || ||| Sbjct 475400828 ATGCCACCCCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCA 475400769 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || ||||| |||||||| | |||||| || || || Sbjct 475400768 GACAGGGTACGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGG 475400709 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || | || | |||| Sbjct 475400708 GGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCT 475400649 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||||||||| || || || | ||| |||||||| Sbjct 475400648 ACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599 Score = 84.2 bits (92), Expect = 4e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || ||||| | || || |||| |||| || || || |||||| Sbjct 475401245 TCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAG 475401186 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | |||||| || || || || || |||||||| || || || || || ||||| Sbjct 475401185 ATCAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTC 475401126 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | || | ||||||||| || || ||||| || ||||| | || || | | Sbjct 475401125 TCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 475401066 Query 192526 AATATCTGCAT 192536 ||||||||||| Sbjct 475401065 AATATCTGCAT 475401055 >seq2 Length=541556283 Score = 109 bits (120), Expect = 1e-18 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 49818 attaaACATGCAAAA-TCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAA 49876 ||||| || |||||| ||| ||||||| |||| || || |||| |||||| ||| Sbjct 435770818 ATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAA 435770759 Query 49877 AGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGA 49936 ||||||||| |||||||| |||| || || ||||| ||||| ||||||||| || ||| Sbjct 435770758 AGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGA 435770699 Query 49937 AAAGAATATACCCTCGACACACGCAAATGCTA 49968 |||||| || || || || ||||| |||| Sbjct 435770698 AAAGAAGATTCCTTCAACTGCTGCAAAAGCTA 435770667 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || ||||| | || || |||| |||| || || ||||||||| Sbjct 204602004 TCTTTTTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 204602063 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | |||||| || || || || || |||||||| ||||| || || || ||||| Sbjct 204602064 ATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 204602123 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | || | ||||||||| || |||||||| || ||||| || || || | | Sbjct 204602124 TCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACA 204602183 Query 192526 AATATCTGCAT 192536 ||||||||||| Sbjct 204602184 AATATCTGCAT 204602194 >seq5 Length=304825324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| || || ||||||||||| | |||||| || || | || || ||||| | Sbjct 77494261 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTAGGGGAATGCCTTCCT 77494320 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| |||||| || ||||| | || | ||| | || ||||| || |||| Sbjct 77494321 TGTCTTGAATTTTAACCTTGACATTCTTAATGGTATCACTGGGCTCCACTTCAAGGGTAA 77494380 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||| || || || | ||| |||||||| Sbjct 77494381 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 77494417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984416729931600