Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 136 7e-27 seq1 134 2e-26 seq2 114 2e-20 seq7 107 3e-18 seq3 87.8 3e-12 >seq6 Length=292091736 Score = 136 bits (150), Expect = 7e-27 Identities = 357/531 (67%), Gaps = 28/531 (5%) Strand=Plus/Minus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||| | || ||||| ||||| ||||| ||||| || || || || ||||||||||||| Sbjct 153786726 ACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGAT---ATCCATAAAATCAAAT 153786670 Query 38907 GGATTTT-TGGTATTATAATATTTTTCTC--CTA--TCAATACATATAATAATCTATCGG 38961 |||||| || | | | ||| || | ||| || | ||||| | ||| || | Sbjct 153786669 AGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCA-ACATA----AGTCTGTCTG 153786615 Query 38962 CCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTA 39021 | |||||||| | |||||| |||||| |||||||| || | || || | || | Sbjct 153786614 CTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTACAGGCA 153786555 Query 39022 ATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattatcataattata 39080 | || ||| |||| ||| || | ||||||| ||||| | | | ||||| || | Sbjct 153786554 AAGCTTCAGTCAA-AAACTCCTGTTCTATTCTAACAGCAT---TGACGATCAT--TTCTT 153786501 Query 39081 ttattttttgat---aatttatatttaatatga-ttcgcatataGTAAACATGCAAAATC 39136 | | ||||| | || | | || | | || | | || ||| || |||||||| Sbjct 153786500 TCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACAT--TAAGCAGGCAAAATC 153786443 Query 39137 CGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAA 39196 ||||||||| || || || ||||||||||| |||||||||||| |||||||| Sbjct 153786442 ACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTAA 153786383 Query 39197 TCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCAC 39256 |||| || || |||| ||||| ||||||||| || ||||||||| || || || || Sbjct 153786382 ACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAAC 153786323 Query 39257 ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTAT 39316 ||||| ||| | | | | ||| | || || | || |||||| | | Sbjct 153786322 TGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTCTTTGTCCCCAATCCA--TCAA 153786265 Query 39317 GGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 |||||| || ||||| ||||| | | |||||| |||| || || || || Sbjct 153786264 GGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAA 153786214 >seq1 Length=748055161 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| || || | ||||||| ||| | || ||||| || || ||| Sbjct 532227675 GTAGACTCCTTCTGAATGTTGTAGGCAGATAAAGTACGTCCATCTTCCAACTGCTTGCCA 532227616 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| ||||| ||||| ||||| || || ||||| ||||||||||| || || Sbjct 532227615 GCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCCTTATCTTGTATCTTGGCCTTG 532227556 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| |||||||| |||| ||| || || ||||| ||||| || || || || || Sbjct 532227555 ACATTTTCAATAGTATCGGACGGTTCAACCTCAAGAGTGATGGTCTTCCCCGTCAAAGTC 532227496 Query 172053 TTAATGAATATCTGCAT 172069 || ||||| |||||||| Sbjct 532227495 TTTATGAAAATCTGCAT 532227479 Score = 96.9 bits (106), Expect = 6e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || ||||||| | | || ||||| || || ||||||||||| ||||| Sbjct 723259668 AATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCT 723259609 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || | | |||| ||||||||||| || || ||||| ||||| Sbjct 723259608 TTGTTGATCAGGAGG-AATACTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGT 723259550 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| |||| ||| | | ||||| |||| || || || || || || | || ||||| Sbjct 723259549 ATCGGACGGTTCGAACCCAAGAGTGGTGGTCTTCCCCGTGAAAGTCTTCACAAAAATCTG 723259490 Query 172067 CAT 172069 ||| Sbjct 723259489 CAT 723259487 Score = 89.7 bits (98), Expect = 9e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 39162 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 39221 |||| |||||| |||||||||||| |||||||| |||| || || ||||| ||||| Sbjct 529237647 ATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATG 529237706 Query 39222 GATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 ||||||||| || ||||||||| || || || || ||||| |||| Sbjct 529237707 GATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTA 529237755 >seq2 Length=541556283 Score = 114 bits (126), Expect = 2e-20 Identities = 353/533 (66%), Gaps = 26/533 (5%) Strand=Plus/Minus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||| | || ||||| ||||| ||||| ||||| || || || | ||||||||||||| Sbjct 435771088 ACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCCATAAAATCAAAT 435771029 Query 38907 GGATTTT-TGGTATTATAATATTTTTCT--CCTA--TCAATACATATAATAATCTATCGG 38961 ||||||| || | | | ||| || | |||| || | ||||| | ||| || | Sbjct 435771028 GGATTTTCTGCTCTAAAAATCTTGCTAAAACCTAGTTCCA-ACATA----AGTCTGTCTG 435770974 Query 38962 CCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTA 39021 | |||||||||| ||||| |||||| |||||||| || | ||||| | | | Sbjct 435770973 CTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTTTATATGCA 435770914 Query 39022 ATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattatcataattata 39080 | | ||| |||| || | || || ||||| ||||| | | | |||||| Sbjct 435770913 AAGGTTCAGTCAAGAACTCCTGTT-CTATTCTAACAGC------ACTGACGATAATTTCT 435770861 Query 39081 tt-attttttgat---aatttatatttaatatga-ttcgcatataGTAAACATGCAAAA- 39134 || | ||||| | || | | | | | || | | || ||| || |||||| Sbjct 435770860 TTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACAT--TAAGCAGGCAAAAA 435770803 Query 39135 TCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATT 39194 || ||||||| | || || || |||| |||||| |||||||||||| |||||| Sbjct 435770802 TCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATT 435770743 Query 39195 AATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCC 39254 || |||| || || ||||| ||||| ||||||||| || ||||||||| || || || Sbjct 435770742 AAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCA 435770683 Query 39255 ACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTT 39314 || ||||| |||| | | | ||| | || || | || |||||| | Sbjct 435770682 ACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCTTTGTCCCCAATCCATCAT 435770623 Query 39315 ATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 | |||||| || ||||| ||||| | | |||||| |||| || || || || Sbjct 435770622 AAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAA 435770570 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || |||||||| || | |||||| ||||| || || || |||||||| Sbjct 204602040 TCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTG 204602099 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || ||||| || || || | ||||||||| || |||||| Sbjct 204602100 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATG 204602159 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || | ||||||||||| Sbjct 204602160 GTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 204602194 >seq7 Length=260857928 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || ||||||| | | || ||||| || || |||||||| || ||| | Sbjct 194049634 AATGTTGTAGTCAGATAAAGTATGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAATTT 194049575 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || || ||||| ||||||||||| || || ||||| ||||| Sbjct 194049574 TTGTTGATCAGGAGGAATACCTTCCTTATCTTGTATCTTGGCCTTGACATTTTCAATAGT 194049515 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| ||| || || | ||||| ||||| || || || || || || ||||| ||||| Sbjct 194049514 ATCAGACAGTTTGACCACAAGAGTGATGGTCTTCCCTGTCAAAGTCTTCATGAAAATCTG 194049455 Query 172067 CATT 172070 |||| Sbjct 194049454 CATT 194049451 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| ||||| || | |||||| ||||| || || || |||||||| ||||| || Sbjct 475400744 TGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATC 475400685 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || || | ||||||||| || || |||||||||||| Sbjct 475400684 TTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTACCA 475400625 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | || |||||||| Sbjct 475400624 GTCAAGGTCTTCACAAAGATCTGCAT 475400599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905079247972800