Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 122 3e-22 seq6 105 2e-17 >seq2 Length=541556283 Score = 122 bits (134), Expect = 3e-22 Identities = 377/571 (66%), Gaps = 17/571 (3%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| ||| || || | || |||||||| |||||||| ||| | | Sbjct 435770227 TTTGTCATCTTCCCCATTGAGTACCATGACATTTGGCACATGTATAAGAAATCATAGGCC 435770286 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | || ||||| | || || ||| | || || || |||| |||||||||| Sbjct 435770287 TCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATATGCAGC--ACTGGGAAGCTT 435770344 Query 133194 TTA---CTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 | | ||| ||| ||| || | ||| || ||| | ||||| || ||||| || |||| Sbjct 435770345 TGAAGTCTGAGGA-GAAGTACTTCATATCTC-ATG-TGTTAGCTTTCTTTGCAGCAAGTG 435770401 Query 133251 ATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAG 133310 |||| || | ||||||||| | ||||||| |||||| | | | |||| Sbjct 435770402 ATGGCATAATAAATGAAAATTTGGTGGAGCGGTTTAGCCAAGAAGTATAGGTAACAGAAG 435770461 Query 133311 CCC-GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 ||| | ||| ||||| | || |||| ||||| | || |||||| | ||| | Sbjct 435770462 CCCCGCTGCTTCTATGGCTTCCAAATTGGAATGGAGAGCATACATTCTGAAATGTATAAT 435770521 Query 133370 ACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA--CTATTCAACGCCA 133427 ||| ||||| ||||| || || || || | |||| || || ||||| |||| Sbjct 435770522 CTTCTTATTGACACTTATATTAAGGA--CCCTAAAGAAAGGGAATTTCTCTTCAATGCCA 435770579 Query 133428 TTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACA 133487 || | | |||||| ||||||||||| |||||||||| | |||||| ||||| Sbjct 435770580 TTGAAACACTACCTTGTGTTAAAAAGAAAGCTGACTGGGCCTTATGATGGATTGGGGACA 435770639 Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCA 133547 | || | | || | | | | || |||||||| | ||| || || || || || Sbjct 435770640 AAGAAGCAACATATGGTGAACATGTTGTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTT 435770699 Query 133548 GTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGT 133606 |||| | || ||| || || || ||||| || || || ||| | | |||||| | | Sbjct 435770700 CTGGTTC-TTTTGCATCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACT 435770758 Query 133607 TTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 ||||| || ||||||||| || || |||| Sbjct 435770759 TTTTCAAATGAACTTATTAGCAGAGATGAGG 435770789 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || ||| || ||||| || ||||| || || |||| |||||||| ||||| Sbjct 255144885 ACCAGTTTCAGCTGTCTTGACAGCAGTGTCAATAAGCCCTTCACGCCCACCCATGGCATG 255144944 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| ||| || | | |||| |||| || ||||| || Sbjct 255144945 GAAGAAGAACTCGGTGGGTGTTAGACCAGCCAAGTAGGAATTCTCCACAAAACCTCGGCT 255145004 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| || || || ||| | ||||| |||||||||| || | |||| | || Sbjct 255145005 CTCAGGACCATAATCATCTTTGATGAAGTGGGGCAGGGTCCGGTGTTTGAAGCCAAAGGG 255145064 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || ||||| || || || ||||| ||||||| Sbjct 255145065 AATCCGCTTGCCTTCTACATTCTGTTGTCCCA 255145096 >seq6 Length=292091736 Score = 105 bits (116), Expect = 2e-17 Identities = 371/568 (65%), Gaps = 16/568 (3%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGCAAGA 133134 ||||| || ||||| ||| || || | || ||||| || |||||||| ||| ||| | | Sbjct 153785874 TTTGTCATCTTCCCCATTGAGTACCATGACATTTGACACATGTATAAGAAAGCAG-AGGC 153785932 Query 133135 TTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCC 133192 | || ||||| | || || ||| | || || || |||| |||||||| | Sbjct 153785933 CTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATATTCAGC--ACTGGGAAACT 153785990 Query 133193 CTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || || | || || ||| | |||| ||| ||||| || |||||| Sbjct 153785991 TTGAAGTCTGACGAGAAGTACTTCATATCTCACGTGTTAGGGTTCTTTGCAGCAAGTGAT 153786050 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||||| | ||||||| |||||| || | | |||||| Sbjct 153786051 GGCATAGTAAATGAAAATTGGTTGAAGCGGTTTAGCCAAGAAGTACAGGTAACAGAAGCC 153786110 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 || ||| ||||| | || ||||| |||| ||||| |||||| | ||| | | Sbjct 153786111 CGCTGCTTCTATGGCTTCCAAATTGCAATGGGAAATAGACATTCTGAAATGTATAGTCTT 153786170 Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA--CTATTCAACGCCATTA 133430 || ||||| || || | || || || | |||| || || ||||| |||||| Sbjct 153786171 CTTATTGACACATA--TTAAGGA--CCCTAAAGAAAGGGAATTTCTCTTCAATGCCATTG 153786226 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490 | | |||||| ||||||||||| |||||||||| | |||||| |||||| Sbjct 153786227 AAACACTACCTTGTGTTAAAAAGAAAGCTGACTGGGC--CTTGATGGATTGGGGACAAAG 153786284 Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550 || | | || | ||| | | |||||||| | ||| || || || || || || Sbjct 153786285 AAGCAACATATGGTGAACGTGTTGCAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTG 153786344 Query 133551 GTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTT 133609 || | || ||| || || || |||| || || || ||| | | |||||| | |||| Sbjct 153786345 GTTC-TTTTGCATCCATATTCTGGCCCAAGAAACGAGGTTTAATGCCTGGATTAACTTTT 153786403 Query 133610 TCTAACGAACTTATTTCAAGGGACGAGG 133637 || || ||| ||||| || || |||| Sbjct 153786404 TCAAATGAATTTATTAGCAGAGATGAGG 153786431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471723009962392