Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-32 >seq2 Length=541556283 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 251267587 GCTTGGCCAATTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 251267528 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 251267527 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 251267468 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| ||||||||| ||| |||| Sbjct 251267467 TGTCGTTGACGAAAGAATTCATGATGCCCATAGCCTTGGACGAGATGCCCGTGTCCGGGT 251267408 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 251267407 GGACCTGCTTCAGCACCTTGTA 251267386 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 251292516 GCTTGGCCAATTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 251292575 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 251292576 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 251292635 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| ||||||||| ||| |||| Sbjct 251292636 TGTCGTTGACGAAAGAATTCATGATGCCCATAGCCTTGGACGAGATGCCCGTGTCCGGGT 251292695 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 251292696 GGACCTGCTTCAGCACCTTGTA 251292717 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| | | || Sbjct 258218312 GCTTGGCCAGCTCCCCGGGGAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAAGTGA 258218253 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||||||| |||||| | ||||||| |||| | Sbjct 258218252 TGGTGGAGCGCTTGTTGTAGTGCGCCAGACGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 258218193 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 258218192 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 258218133 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 258218132 GGACCTGCTTCAGCACCTTGTA 258218111 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| | | || Sbjct 258242296 GCTTGGCCAGCTCCCCGGGGAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAAGTGA 258242355 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||||||| |||||| | ||||||| |||| | Sbjct 258242356 TGGTGGAGCGCTTGTTGTAGTGCGCCAGACGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 258242415 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 258242416 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 258242475 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 258242476 GGACCTGCTTCAGCACCTTGTA 258242497 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 494952095 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 494952036 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 494952035 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 494951976 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 494951975 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 494951916 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 494951915 GGACCTGCTTCAGCACTTTGTAGA 494951892 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 494970749 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 494970808 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 494970809 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 494970868 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 494970869 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 494970928 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 494970929 GGACCTGCTTCAGCACTTTGTAGA 494970952 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 494992572 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 494992631 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 494992632 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 494992691 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || ||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 494992692 TATCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 494992751 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| ||||||| Sbjct 494992752 GGACCTGCTTCAGCACTTTGTAGA 494992775 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| | ||||||||| || ||||||||||| || | || Sbjct 251246574 GCTTGGCCAATTCCCCAGGCAGCAGCAGGCGCACAGCAGTCTGGATCTCCCGGGAAGTGA 251246515 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 251246514 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGA 251246455 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| || |||||| ||| |||| Sbjct 251246454 TGTCGTTGACGAAAGAATTCATGATGCCCATAGCCTTGGACGAAATGCCCGTGTCCGGGT 251246395 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 251246394 GGACCTGCTTCAGCACCTTGTA 251246373 Score = 138 bits (152), Expect = 1e-26 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||||||||| || ||||||||||| || | || Sbjct 494994887 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGATGTGA 494994828 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| || |||||| || |||| || |||| | Sbjct 494994827 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGAGAAGCCTCGCTGGCGATACGCTCGAAGA 494994768 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| || |||| Sbjct 494994767 TGTCGTTGACGAAGGAGTTCATGATGCCCATTGCCTTGGAGGAGATGCCGGTATCAGGGT 494994708 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | || ||||| ||||| ||||||| Sbjct 494994707 GGACTTGCTTCAGCACTTTGTAGA 494994684 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | |||||||||||| ||||||||||| || | | || Sbjct 251514208 GCTTGGCAAGCTCTCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCTCGGGAGGTGA 251514149 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || ||||| ||| |||||| | | ||||| |||| | Sbjct 251514148 TGGTAGAGCGTTTGTTGTAATGTGCCAGGCGGGACGCCTCGCCGGCTATGCGCTCGAAGA 251514089 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| || | Sbjct 251514088 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGATGAGATGCCTGTGTCAGGAT 251514029 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | |||||||| Sbjct 251514028 GGACCTGCTTTAAAACCTTGTA 251514007 Score = 104 bits (114), Expect = 3e-16 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| ||| | ||| ||||| || |||||||||||||| | ||| ||| Sbjct 251442930 GCCAACTCTCCGGGCAACAGCAGACGCACAGCAGTCTGGATCTCGCGGGACGTGATAGTG 251442989 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||| ||||| | |||||||| ||| ||||| |||| || |||| |||||| Sbjct 251442990 GAGCGTTTGTTGTAATGCGCCAGGCGGGAAGCCTCACCAGCGATACGCTCGAAGATGTCG 251443049 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | |||| ||||| ||| || || || ||| Sbjct 251443050 TTGACGAAAGAGTTCATGATGCCCATAGCCTTGGACGAGATACCCGTATCAGGATGGACC 251443109 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| || || ||||| Sbjct 251443110 TGCTTCAGTACTTTGTA 251443126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106727563550072